Scaffold Ga0222718_10000116

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000116
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77995
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (41.32%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002333	Metagenome	569	Y
F013517	Metagenome / Metatranscriptome	270	Y
F029735	Metagenome	187	Y
F037205	Metagenome	168	Y
F101071	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_10000116110	F002333	N/A	MSNQQVTELDAAQKFIYTRTNIRRAFNDFDDTDIADIYLQGEDCLILRRDGSQQTYNREPIKVAYTSYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWYYSHALGHLTPNARLQAAWADRFIHLNDVQKVTALLQSDQADLGHLIAPDGLRAQDMPIDFNSSLDTVEDVKPIFGEPWCSCGSYQQQLNNISSFSQEIEGFKPWCIHLSWFNKYREMLCKRTEARNQAPNGTPSKCVAWWYQPPSDHLSDGLFKVLYTTYGAQAPVSHWRNYKPDEHFTQNHAWDLFFNMMEAGYVPFPGRSLPQLQSVVKKQ
Ga0222718_10000116112	F013517	N/A	MFESFISFCVPVIKDLLWAAAGMLLTYALNKFQTQFN
Ga0222718_1000011636	F000973	GAGG	MQYGLRKSLSEIAHELKGIRNVLSSMWQSRYASGETDGLNPQAFADEYISTEECGKRLGVSDQTIRNWISIGRKDPSKGWTEGIHYVNVSPDVKRKAVIRVPWNYLVQSFARNEKTDEKNLRGTYNLYKPDKEFLK
Ga0222718_1000011639	F101071	AGG	MSEHKVRSVTARNEGAELITSSDLVMAANELMGGIDLDVASSKVANEYVQATEYYTPSDDGLNSQQWYGSAYLFPPAGAYFWDKKNERWKMTRASSISLTSSHAVWFRRMYHAWLAREIKQGLYFSNCPDMIRYEPKIFKFPMCILRTAPYLLCNKDGEVKRKQTCTSFLVYLPPQDASTDAVDTFVKVYGERGHLLV
Ga0222718_1000011641	F037205	N/A	MANILRPTYDPRQDSGTSGAEVSDLRPEQAYDTDLRRLDEDKRDAAESVNRKQNRVAKFFKAARTAGRYRQRAGIAEPTIDGETPRSRLEIDGVELPSLGDSGGRAGGMSYARKPSIQFGKPFG
Ga0222718_1000011680	F029735	N/A	MAKDHRLALDRYIDFTKDPFVKKRNVNFNDSFAVKASTGAPPWVPSRFEQSDLLNRLQTRKLKHNPSLQFVGDVPEEYEAFANIGRFVRKESYDFNEGRALTPLRPEDQPGFSPVWVEAYRISPTVAPDKRSSSPMPRMRNPDPKGYMMAAAEKRALNEAEGNQSVASLLSEEPKDGEDIKKDEEA
Ga0222718_1000011695	F001807	GGAG	MTVLSIEETIVSDTHVKVTAIVDEMRLLYRATHFEPEEWAPALCEVTIAIDPGDPIPLDEDSFCSYLDQLDPQWQLVDAY