Scaffold Ga0222717_10083377

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10083377
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2018
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000913	Metagenome / Metatranscriptome	838	Y
F046975	Metagenome	150	N
F066749	Metagenome / Metatranscriptome	126	N
F067629	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100833771	F066749	GGAG	MKNNEYHGDEHILDEDEYPPMQQWEIDEALADIIGDDKWLAKQQAKTNDNI
Ga0222717_100833773	F046975	AGGAGG	MSKWDDWVEISTTKTALHNGDAPEFFQRAGDWIDELQAQLDNMVSSDNLFNEVKTQVLQGLIRSLDDDRAAALQLMVERGPDHE
Ga0222717_100833774	F067629	AGAAGG	MKTKGEVIRFKLELMAVMLVSGREDQAQELMQQALDLCDTITEQMPKEAA
Ga0222717_100833776	F000913	GGAG	MKHWELEHNGEHIRIEWNESATFNLQTPIGGEWVDYHCFTCYGIETDHEALEQAYEMLETLEAV