Scaffold Ga0222717_10076251

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10076251
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2128
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035726	Metagenome / Metatranscriptome	171	Y
F056584	Metagenome	137	Y
F063454	Metagenome / Metatranscriptome	129	Y
F074735	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100762512	F056584	AGGAG	MATLTVSSDNNNGIVVLRGKMSWIQKRAVAYRNKGFNVLITWEQK
Ga0222717_100762513	F074735	AGGAG	MNEKKLTKQELIEAIKSYERIRNNKALMNTFTKHMRGAFVVRLGRLNAELKRRG
Ga0222717_100762514	F035726	AGGA	MTLIKKKTEKKTYYSDLTKSAMVKVITEQTGLTLPALERATKIDIENIAVALDVKADYKGAK
Ga0222717_100762516	F063454	GGAG	MKQLELDLQIKGKSSFDDIPTLKELIDRKKERPKHLENLSDKHYQLMQEIFKRRF