NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10026600

Scaffold Ga0222717_10026600


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10026600 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3842
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008882Metagenome / Metatranscriptome326N
F013295Metagenome272N
F019728Metagenome228Y
F038638Metagenome / Metatranscriptome165Y
F079942Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100266001F038638N/AMSYKVSYEIAEYKYINHMKETYSLGGDLEYPSRTHSRQDTEGNWLLISEQGLKMGKVFKNGDIIA
Ga0222717_100266003F079942GGGGGMSIIYVVIDEFHGIIDDVNVYKNKPKNLKTISEDERQRCFTLEIKESTNE
Ga0222717_100266006F013295AGGAGMKINNLTPKQFARREIIKYLRDLFDNPAKYIKDFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGES
Ga0222717_100266007F019728N/AMITKKELEKNNWTVVPKGVWFGVDFAESHKVNVLDVLTDLLDLDTDADGYNFVVCAYKKEESNNENK
Ga0222717_100266008F008882GAGGMSIKRYNFSKPKINRQELELLNWFLAHTNDNPLINPQALELFKANGYSAKNYQDLVNKVKTILKTYKTKGKNDN

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