Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10009051 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10009051 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7009
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7009

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (80.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F032084	Metagenome	181	N
F032266	Metagenome	180	Y
F038638	Metagenome / Metatranscriptome	165	Y
F046979	Metagenome / Metatranscriptome	150	Y
F055270	Metagenome / Metatranscriptome	139	Y
F076030	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000905110	F004343	GAGG	MTQHREMIEEAKRLLNSERENIPSMSKNFNKDYWLLTYPCGKIVKTYEDKRKKDVIIQES
Ga0222717_1000905113	F038638	AGGA	MSYEIAEYKYINHMKETYSLGGDLEYPSRTHSRQDTEGNWLLISPQGLKMAKIFKNGDII
Ga0222717_1000905115	F032084	AGGAG	MRLILSEKDKHIIVTVLGDYATEIDRQAHKSKEDLDTYKRIENIISQVAFGFDKEEKEE
Ga0222717_1000905117	F046979	GAGG	MKCFNCNANMKLEREKDISRYNNLFNLKLTFSCPKCGAVANAYPPKDDNQKVSHGG
Ga0222717_1000905118	F032266	GAGG	MSDAVKGVVFIDDAINLSQDELKKKFKEAVENNEINHFEIQTRGEK
Ga0222717_100090512	F076030	N/A	MSEKLPKKGTPGRKKIHFTEEQLLEAERLAGLGFSEESLCKAVFGCSVSTLQRRKKEFNNIDQYIRRGKIKSIEAVSSALFDSATGRNGRDPSVSAQIFFLKNKGKEAGNPWADVQQVDNNINLSDIISSANARIIEHKGEALAHDAREEIDIKQLNKAKNS
Ga0222717_100090515	F055270	AGGTGG	MELLHNREFKYYDKNADSVDMVNYIKTIMANNFIEEIYSLCLEYPQQFNQALTEIKYLYSKKLNAFVYPPKNYIAYKQGQEQLREVTQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10009051

Overview

Ecosystem & Geography

Associated Families

Sequences