Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10003072 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10003072 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12692
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (12.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12692

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (12.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F037986	Metagenome / Metatranscriptome	167	N
F047377	Metagenome / Metatranscriptome	150	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000307212	F050011	N/A	MNVSLEKFSDCLKPYLLQTVAICTDRKIIRKGKLRIFQIKQHYAKLTLEDEVRTRIYEIPYPFDISTVGTKTILCYKLNKFLNIEDLQLQVKFLDSSKKSKIYNENLYIMPLDKVDL
Ga0222717_1000307213	F015734	N/A	MIIQRAALDSLLLNNVCEIRFVRRRPRAGDGPTRRMLCTKSHDLLNSVNGRTTLNYAPPKGPVKINEAVENVLVVWDILMQSYRTISMNSCDLIKQIPNNDFWEYFNENIYPMSPEQKYNFMNS
Ga0222717_1000307214	F019756	N/A	MAQRSIDTLATQRHLIDLSTNNEGDVGLTDDFELTMIFDDILLVEYVDENDTGEIERNGIFVPTNALTKAWRKARVILAGPKAEYTKPGDIVIFPNNLGVTVANIDVNGSAVKKGIFLNEDRLFGICKLKNDNTKSSS
Ga0222717_1000307215	F074154	GGAG	MNFFQLQNKLFYSNKQKQPEPLDLEGEQSFVPFLFNRWLTMYSKETVCFVNETLNKYCGIFDTDKQKTYRLYFNLIPRLKFKRISYIKKPKRDKDKQDEADQLKMIAKNKNMSVRELEMYKNLLD
Ga0222717_100030723	F037986	N/A	MNKKSLPTELQDVLTEDSVESIEVALKEKVELSVEAALASQDELYAEKLETLIVQIDKDHTTKMQSIVEAVDKNNASKLGNVIKKYEAELNEGASQFKETLVESISNYLEEYIDEAVPTAAIEEATRNNTAMTVLNNLRSTLAVDSSLMSESVKTAIVEGKTEMDELKAEIAKLKKTNETLNENYNQAKSAAFLENRCAKFSGKKSTYLKKVLSDKSPRFIEENFEYTARLFDRKEKEQLEVIREEAISNRTVKADAPKTVVEEKAKPSVPSNPYLEGLDLMK
Ga0222717_100030724	F047377	N/A	MSEKPNKNNAKDKIVKFIDAISGENYAAANKYLQSAVQDKLEARIRQAAEKPIF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10003072

Overview

Ecosystem & Geography

Associated Families

Sequences