Scaffold Ga0222717_10002734

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10002734
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13494
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F018106	Metagenome / Metatranscriptome	237	Y
F020385	Metagenome / Metatranscriptome	224	Y
F046471	Metagenome / Metatranscriptome	151	N
F070310	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000273412	F006939	AGGAG	MALPENMVANVLAENQNQFITVKFLTKDDEVRVYNGRMNVIKGLKGNERGKIAAAALKAHGYVTLKTSDGYKCFKSDRVLAFKAGGRHVFTMGEEIT
Ga0222717_1000273414	F070310	AGGA	MTEELERELRMLGVLDQKTPVVENDVYPIWIRDDVVFDEDGQPNF
Ga0222717_1000273416	F046471	AGGAG	MTEECQECQGEGVCEHERWEKYGDTYEPYAEYRACENCNGTGQTESDE
Ga0222717_1000273419	F020385	AGGAG	MTIKPTFKQILAERQEYIDALKLNGDIYALEFLTCSFLYDNGNAEISPLTTAQHSTLAKWKATTQ
Ga0222717_1000273423	F018106	AGG	MATKKRLSEGEAKSILGVAGDNTRTGQIRADEFIPELRGKNAIRKYREMRD