Scaffold Ga0222717_10001586

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10001586
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18420
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002804	Metagenome / Metatranscriptome	529	Y
F053312	Metagenome / Metatranscriptome	141	N
F072378	Metagenome / Metatranscriptome	121	N
F095315	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000158611	F072378	AGG	MENLNLSKSLEDCFEWELNDQIIRFDSIIDSLMSTDVPRSQFRDELIDWQDDVANLVDEVSALEPYEGFREFATMAEELFGTEV
Ga0222717_1000158622	F002804	GGAGG	VEYLLDLYVLVTSLVTIASVVCNYTETPKDDEFVAKAYKVLEQFAFLGNKAKQ
Ga0222717_100015867	F053312	GGGGG	MSYKILNEAVGLIRDENPLWEGSYQSLPDIAKDGLITLWLATHPTWMDDVFPHTVSDKRMLALECVYSEDATSRMAAAMFRDAAERNAKDVDNDAYLSEALDDFEAILDTPDFLEEIRHQIYMYLEPSMEELVMDSFQDLNHLDRLVMGSH
Ga0222717_100015869	F095315	GGAGG	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS