Metagenome / Metatranscriptome Family F095315

Overview

Basic Information

• Family ID: F095315
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 105
• Average Sequence Length: 63 residues
• Representative Sequence: MDVKTLIYEANAYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY
• Number of Associated Samples: 70
• Number of Associated Scaffolds: 105

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 85.71 %
• % of genes near scaffold ends (potentially truncated): 33.33 %
• % of genes from short scaffolds (< 2000 bps): 79.05 %
• Associated GOLD sequencing projects: 59
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (88.571 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (28.571 % of family members)
• Environment Ontology (ENVO): Unclassified (75.238 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (92.381 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 92.06%
  β-sheet: 0.00%
  Coil/Unstructured: 7.94%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF05766	NinG	7.62
PF11753	DUF3310	3.81
PF03237	Terminase_6N	2.86
PF04466	Terminase_3	2.86
PF13392	HNH_3	1.90
PF02195	ParBc	1.90
PF08291	Peptidase_M15_3	0.95
PF13884	Peptidase_S74	0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	2.86

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
All Organisms	root	All Organisms	11.43 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
cellular organisms	root	All Organisms → cellular organisms	9.52 %
Viruses	superkingdom	All Organisms → Viruses	1.90 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.71 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.76 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	3.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Euryarchaeota archaeon TMED97	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	3.81 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.95 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.57 %
Euryarchaeota archaeon TMED97	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	3.81 %
Porticoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000101|DelMOSum2010_c10011244	Not Available	5729
3300000101|DelMOSum2010_c10058100	Not Available	1880
3300000101|DelMOSum2010_c10103313	Not Available	1176
3300000116|DelMOSpr2010_c10124930	Not Available	922
3300000116|DelMOSpr2010_c10232616	Not Available	571
3300001352|JGI20157J14317_10041200	Not Available	2247
3300001352|JGI20157J14317_10148159	Not Available	736
3300002930|Water_100795	Not Available	6244
3300003592|JGI26246J51724_1100553	Not Available	519
3300004448|Ga0065861_1198712	Not Available	608
3300004457|Ga0066224_1052065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	2424
3300006029|Ga0075466_1003107	All Organisms → cellular organisms → Bacteria → Proteobacteria	6043
3300006029|Ga0075466_1038051	Not Available	1468
3300006029|Ga0075466_1173826	Not Available	544
3300006752|Ga0098048_1001738	Not Available	9387
3300006752|Ga0098048_1178625	Not Available	629
3300006752|Ga0098048_1204863	Not Available	582
3300006802|Ga0070749_10593106	Not Available	598
3300006802|Ga0070749_10616061	Not Available	585
3300006803|Ga0075467_10020989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4207
3300006870|Ga0075479_10408182	Not Available	524
3300006924|Ga0098051_1077710	Not Available	899
3300007229|Ga0075468_10027548	All Organisms → cellular organisms → Bacteria	2046
3300007229|Ga0075468_10089577	Not Available	988
3300007231|Ga0075469_10030481	Not Available	1734
3300007276|Ga0070747_1203864	Not Available	696
3300007540|Ga0099847_1095048	Not Available	910
3300007540|Ga0099847_1136012	Not Available	736
3300007692|Ga0102823_1224547	Not Available	503
3300009003|Ga0102813_1180462	Not Available	655
3300009024|Ga0102811_1038194	Not Available	1825
3300009024|Ga0102811_1303049	Not Available	599
3300009076|Ga0115550_1208472	Not Available	655
3300009079|Ga0102814_10048986	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	2349
3300009079|Ga0102814_10276910	Not Available	913
3300009086|Ga0102812_10080413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	1795
3300009086|Ga0102812_10364942	Not Available	786
3300009434|Ga0115562_1143056	Not Available	899
3300009442|Ga0115563_1018417	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	3899
3300009507|Ga0115572_10441235	Not Available	725
3300009507|Ga0115572_10661021	Not Available	572
3300010150|Ga0098056_1022574	All Organisms → Viruses → Predicted Viral	2236
3300010368|Ga0129324_10232566	Not Available	739
3300011118|Ga0114922_10474409	Not Available	1036
3300012524|Ga0129331_1003643	Not Available	574
3300012524|Ga0129331_1181571	Not Available	770
3300013010|Ga0129327_10405661	Not Available	724
3300013010|Ga0129327_10810303	Not Available	532
3300017697|Ga0180120_10428172	Not Available	517
3300017727|Ga0181401_1068466	Not Available	941
3300017735|Ga0181431_1007704	Not Available	2629
3300017735|Ga0181431_1015187	Not Available	1814
3300017742|Ga0181399_1044980	Not Available	1164
3300017767|Ga0181406_1084550	Not Available	966
3300020166|Ga0206128_1116068	Not Available	1130
3300020166|Ga0206128_1185728	Not Available	808
3300020166|Ga0206128_1257881	Not Available	638
3300020182|Ga0206129_10021728	Not Available	4948
3300020182|Ga0206129_10090455	Not Available	1652
3300020182|Ga0206129_10110426	Not Available	1409
3300020182|Ga0206129_10231315	Not Available	791
3300020185|Ga0206131_10179381	Not Available	1067
3300020187|Ga0206130_10007273	Not Available	12322
3300020187|Ga0206130_10117593	Not Available	1495
3300021378|Ga0213861_10456041	Not Available	616
3300021957|Ga0222717_10001586	Not Available	18420
3300021957|Ga0222717_10663192	Not Available	538
3300021959|Ga0222716_10216062	Not Available	1204
3300021959|Ga0222716_10591586	Not Available	607
3300022053|Ga0212030_1022263	Not Available	859
3300022053|Ga0212030_1043144	Not Available	636
3300022061|Ga0212023_1011935	Not Available	1124
3300022061|Ga0212023_1016384	Not Available	988
3300022164|Ga0212022_1052856	Not Available	628
3300022164|Ga0212022_1066936	Not Available	552
3300022169|Ga0196903_1004840	Not Available	1759
3300022169|Ga0196903_1026384	Not Available	693
3300022169|Ga0196903_1029589	Not Available	649
3300022178|Ga0196887_1076716	Not Available	790
(restricted) 3300023109|Ga0233432_10068318	All Organisms → Viruses → Predicted Viral	2135
(restricted) 3300023210|Ga0233412_10381746	Not Available	629
3300024192|Ga0228637_1049396	Not Available	849
3300024292|Ga0228630_1000121	Not Available	34265
(restricted) 3300024340|Ga0255042_10033287	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	1211
(restricted) 3300024518|Ga0255048_10252592	Not Available	857
3300025070|Ga0208667_1010810	Not Available	2083
3300025083|Ga0208791_1024450	Not Available	1189
3300025098|Ga0208434_1012608	Not Available	2283
3300025508|Ga0208148_1058887	Not Available	924
3300025543|Ga0208303_1007325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3613
3300025543|Ga0208303_1053547	Not Available	971
3300025640|Ga0209198_1197142	Not Available	515
3300025645|Ga0208643_1175788	Not Available	523
3300025809|Ga0209199_1004059	Not Available	13790
3300025809|Ga0209199_1044396	Not Available	2278
3300025809|Ga0209199_1220197	Not Available	644
3300025880|Ga0209534_10169146	Not Available	1131
3300027753|Ga0208305_10338717	Not Available	522
3300027753|Ga0208305_10346034	Not Available	515
(restricted) 3300028045|Ga0233414_10140077	Not Available	1065
3300028287|Ga0257126_1225017	Not Available	571
3300028416|Ga0228614_1026388	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97	1416
3300028599|Ga0265309_10286789	Not Available	1054
3300032274|Ga0316203_1033111	Not Available	1503
3300034375|Ga0348336_066444	Not Available	1379

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	39.05%
Pelagic	Environmental → Aquatic → Marine → Pelagic	18.10%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.43%
Oceanic	Environmental → Aquatic → Marine → Oceanic	8.57%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	7.62%
Strait	Environmental → Aquatic → Marine → Strait	5.71%
Inlet	Environmental → Aquatic → Marine → Inlet	4.76%
Unclassified	Environmental → Aquatic → Marine → Unclassified	3.81%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	0.95%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	38.10%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	18.10%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	10.48%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	5.71%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	4.76%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	3.81%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.95%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.95%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.95%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	0.95%

Habitat

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	28.57%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	9.52%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	9.52%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	8.57%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	7.62%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	5.71%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	4.76%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	3.81%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.81%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	3.81%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.81%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.86%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.90%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.95%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.95%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.95%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.95%
Estuary Water	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water	0.95%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	0.95%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental
3300001352	Pelagic Microbial community sample from North Sea - COGITO 998_met_07	Environmental
3300002930	Estuary water microbial communities from Pearl Estuary, Zhujiang, China	Environmental
3300003592	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA	Environmental
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental
3300006924	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG	Environmental
3300007229	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA	Environmental
3300007231	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA	Environmental
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental
3300007692	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743	Environmental
3300009003	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725	Environmental
3300009024	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705	Environmental
3300009076	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511	Environmental
3300009079	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741	Environmental
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental
3300009434	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516	Environmental
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental
3300012524	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental
3300020166	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1	Environmental
3300020182	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2	Environmental
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental
3300020187	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1	Environmental
3300021378	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131	Environmental
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental
3300022053	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)	Environmental
3300022061	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)	Environmental
3300022164	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)	Environmental
3300022169	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)	Environmental
3300022178	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)	Environmental
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental
3300024192	Seawater microbial communities from Monterey Bay, California, United States - 47D	Environmental
3300024292	Seawater microbial communities from Monterey Bay, California, United States - 37D	Environmental
3300024340 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_5	Environmental
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental
3300025070	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)	Environmental
3300025083	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)	Environmental
3300025098	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)	Environmental
3300025508	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)	Environmental
3300025543	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)	Environmental
3300025640	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)	Environmental
3300025645	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)	Environmental
3300025809	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)	Environmental
3300025880	Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)	Environmental
3300027753	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)	Environmental
3300028045 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG	Environmental
3300028287	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m	Environmental
3300028416	Seawater microbial communities from Monterey Bay, California, United States - 15D	Environmental
3300028599	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)	Environmental
3300032274	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1	Environmental
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100112442	3300000101	Marine	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
DelMOSum2010_100581005	3300000101	Marine	MDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRIHLFTMTALLTAFVVYGVIIY*
DelMOSum2010_101033131	3300000101	Marine	MDVKTLIDEANSYADKAIKRSQLELLGSRIREWMLQPIVVYRLHFAVMTALLSAFIIYEVIIY*
DelMOSpr2010_101249302	3300000116	Marine	MDVKTLIRDANNHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY*
DelMOSpr2010_102326162	3300000116	Marine	FRQTSYGESLMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
JGI20157J14317_100412001	3300001352	Pelagic Marine	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHFIATTLLLATFVGYQLMIYPLG*
JGI20157J14317_101481591	3300001352	Pelagic Marine	LMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLVATTLLLAAFLGYELMIYPLS*
Water_1007953	3300002930	Estuary Water	MDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY*
JGI26246J51724_11005531	3300003592	Marine	MDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0065861_11987121	3300004448	Marine	MDVKTLIRDANKHADKAIRRSKAEVVARRFREWLEEPLVVYRLHLFTMTALLTAF
Ga0066224_10520654	3300004457	Marine	MDVKTLIRDANKHADKAIRRSKAEVVARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY*
Ga0075466_10031076	3300006029	Aqueous	MDVKTLIRDANKHADKAIRRSKAEIMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYGVIIY*
Ga0075466_10380514	3300006029	Aqueous	MDVKTLINEANKYADKAIRQSYIEARASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0075466_11738261	3300006029	Aqueous	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELMIYPLS*
Ga0098048_100173814	3300006752	Marine	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVNRIHFIATTLLLATFVGYELIVYPLG*
Ga0098048_11786252	3300006752	Marine	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
Ga0098048_12048631	3300006752	Marine	MDVKTLIDDANAYADKAIRRSELELLGSTVRDWMLQPLVVYRLHFAVLTAVLAAFMIY*
Ga0070749_105931061	3300006802	Aqueous	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRASVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS*
Ga0070749_106160612	3300006802	Aqueous	MDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0075467_100209896	3300006803	Aqueous	MDVKSLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0075479_104081821	3300006870	Aqueous	LFRQTSYGESLMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
Ga0098051_10777103	3300006924	Marine	MSDQLMSCKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
Ga0075468_100275488	3300007229	Aqueous	MDVKSLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVII
Ga0075468_100895774	3300007229	Aqueous	MDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVII
Ga0075469_100304811	3300007231	Aqueous	MSDQLMSSKIRDAHRFADKAIRQSYIEEKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS*
Ga0070747_12038641	3300007276	Aqueous	MDVKTLIYEANAYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0099847_10950481	3300007540	Aqueous	MDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0099847_11360121	3300007540	Aqueous	MDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102823_12245471	3300007692	Estuarine	PLRQITSREPLMDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102813_11804622	3300009003	Estuarine	MDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102811_10381944	3300009024	Estuarine	MDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102811_13030491	3300009024	Estuarine	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLPAHFVG
Ga0115550_12084721	3300009076	Pelagic Marine	KTLINEANAYADKAIRQSYIEAKASRFREWITEPLVVYRLHFAVMTAFLTAFVIYEVIIY
Ga0102814_100489864	3300009079	Estuarine	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS*
Ga0102814_102769102	3300009079	Estuarine	NEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102812_100804131	3300009086	Estuarine	EANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102812_103649423	3300009086	Estuarine	MDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLA
Ga0115562_11430562	3300009434	Pelagic Marine	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFLGYELMIYPLS*
Ga0115563_10184176	3300009442	Pelagic Marine	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGCELMIYPLS*
Ga0115572_104412352	3300009507	Pelagic Marine	MDVKTLIDEANAYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0115572_106610212	3300009507	Pelagic Marine	MSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
Ga0098056_10225743	3300010150	Marine	MDVKTLIDDANAYADKAIRRSELELLGSTVRDWMLQPLVVYRLHFAVLTAVLAAFIIY*
Ga0129324_102325662	3300010368	Freshwater To Marine Saline Gradient	MDVKTLIRDANKHADKAIRRSKAEIMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY*
Ga0114922_104744091	3300011118	Deep Subsurface	MDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTA
Ga0129331_10036431	3300012524	Aqueous	MDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPLVVYRLHFAVMTAFLAAFVIYE
Ga0129331_11815711	3300012524	Aqueous	MDVKTLINEANAYADKAIRQSYIEAKASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0129327_104056611	3300013010	Freshwater To Marine Saline Gradient	MDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEV
Ga0129327_108103031	3300013010	Freshwater To Marine Saline Gradient	MDVKTLINEANAYADKAIRQSYIEARASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0180120_104281721	3300017697	Freshwater To Marine Saline Gradient	MDVKTLINEANAYADKAIRQSYIEARASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0181401_10684661	3300017727	Seawater	MDVKTLIDEANAYADKAIRQSYIEAKASRFREWITEPVIIYRLHFAVMTAFLAAFVLYEVIIY
Ga0181431_10077046	3300017735	Seawater	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELLVYPLG
Ga0181431_10151875	3300017735	Seawater	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLIATTLLLATFVGYELIVYPLG
Ga0181399_10449801	3300017742	Seawater	MDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMAVFLAAFVIYEVIIY
Ga0181406_10845502	3300017767	Seawater	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLIATTLLLATFVGYQLIVYPLS
Ga0206128_11160683	3300020166	Seawater	MDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0206128_11857282	3300020166	Seawater	MDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY
Ga0206128_12578811	3300020166	Seawater	MDVKTLINEANKYADKAIRQSYIEARASRFREWITEPMVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0206129_100217281	3300020182	Seawater	MDVKTLIYEANKHADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0206129_100904553	3300020182	Seawater	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS
Ga0206129_101104262	3300020182	Seawater	MDVKTLINEANAYADKAIRQSYIEAKASRFREWITEPLVVYRLHFAVMTAFLTAFVIYEVIIY
Ga0206129_102313151	3300020182	Seawater	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0206131_101793811	3300020185	Seawater	MDVKTLIMDANKHADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0206130_1000727314	3300020187	Seawater	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFKAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0206130_101175932	3300020187	Seawater	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLVATTLLLAAFVGYELIVYPLS
Ga0213861_104560412	3300021378	Seawater	MDVKTLIRDANKHADKAIRRSKAEVMARRFREWLKEPLVVYRLHLFTMTALLTAFVVYEVIIY
Ga0222717_100015869	3300021957	Estuarine Water	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS
Ga0222717_106631922	3300021957	Estuarine Water	MDVKTLINEANAYADKAIRQSYIEANASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0222716_102160624	3300021959	Estuarine Water	MDVKTLIDEANAYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVIAVFLAAFVIYEVIIY
Ga0222716_105915861	3300021959	Estuarine Water	LMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLIATTLLLATFVGYQLIVYPLS
Ga0212030_10222631	3300022053	Aqueous	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELMIYPLS
Ga0212030_10431441	3300022053	Aqueous	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0212023_10119352	3300022061	Aqueous	MDVKTLIRDANKHADKAIRRSKAEIMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYGVIIY
Ga0212023_10163841	3300022061	Aqueous	MDVKSLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0212022_10528561	3300022164	Aqueous	MDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAF
Ga0212022_10669361	3300022164	Aqueous	MSDQLMSSKIRDAHRFADKAIRQSYIEEKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS
Ga0196903_10048401	3300022169	Aqueous	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVG
Ga0196903_10263842	3300022169	Aqueous	MDVKTLINEANAYADKAIRQSYIEAKASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEVIIY
Ga0196903_10295891	3300022169	Aqueous	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVG
Ga0196887_10767161	3300022178	Aqueous	MDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
(restricted) Ga0233432_100683181	3300023109	Seawater	MDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY
(restricted) Ga0233412_103817461	3300023210	Seawater	VKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLIATTLLLATFVGYQLIVYPLS
Ga0228637_10493963	3300024192	Seawater	MDVKTLIYEANAYADKAIRQSYIEAKVSSFRAWVTEPVVVHRIHFIATTLLLATFVG
Ga0228630_100012113	3300024292	Seawater	MDVKTLIYEANAYADKAIRQSYIEAKVSSFRAWVTEPVVVHRIHFIATTLLLATFVGYQLIAYPLG
(restricted) Ga0255042_100332874	3300024340	Seawater	YEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS
(restricted) Ga0255048_102525922	3300024518	Seawater	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYQLIVYPLS
Ga0208667_10108103	3300025070	Marine	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVNRIHFIATTLLLATFVGYELIVYPLG
Ga0208791_10244503	3300025083	Marine	DAHRFADKAIRQSYIEAKASSFRAWVTEPVVVNRIHFIATTLLLATFVGYELIVYPLG
Ga0208434_10126088	3300025098	Marine	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVNRIHFIATTLLLATFVGYELIVYPL
Ga0208148_10588873	3300025508	Aqueous	KTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLVATTLLLAAFVGYELIVYPLS
Ga0208303_10073258	3300025543	Aqueous	MDVKTLIRDANNHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY
Ga0208303_10535474	3300025543	Aqueous	MDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEVIIY
Ga0209198_11971421	3300025640	Pelagic Marine	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPL
Ga0208643_11757882	3300025645	Aqueous	MDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRIHLFTMTALLTAFVVYGVIIY
Ga0209199_100405910	3300025809	Pelagic Marine	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLVATTLLLAAFLGYELMIYPLS
Ga0209199_10443962	3300025809	Pelagic Marine	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHFIATTLLLATFVGYQLMIYPLG
Ga0209199_12201972	3300025809	Pelagic Marine	SKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0209534_101691465	3300025880	Pelagic Marine	MSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHFIATTLLLATFV
Ga0208305_103387172	3300027753	Estuarine	MDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFV
Ga0208305_103460341	3300027753	Estuarine	YADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY
(restricted) Ga0233414_101400773	3300028045	Seawater	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELMIYPLS
Ga0257126_12250171	3300028287	Marine	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFV
Ga0228614_10263884	3300028416	Seawater	NCYGEPLMDVKTLIYEANAYADKAIRQSYIEAKVSSFRAWVTEPVVVHRIHFIATTLLLATFVGYQLIAYPLG
Ga0265309_102867894	3300028599	Sediment	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIY
Ga0316203_10331114	3300032274	Microbial Mat	MDVKTLIRDANNHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVLIY
Ga0348336_066444_1194_1379	3300034375	Aqueous	MDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMI