NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000684

Scaffold Ga0222717_10000684


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000684 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28959
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (13.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015734Metagenome / Metatranscriptome252Y
F019756Metagenome / Metatranscriptome228Y
F047377Metagenome / Metatranscriptome150Y
F050011Metagenome146N
F074154Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000068410F074154N/AMNFFQLQNKLFYSDKRKKAEYLDSEGEQAFVPFLINRWLTMYSKDTVSFTNETLNKYCGIFDTDKQKTFRLYYNLIPRLKFKRISYIKKKKKDKDKLDETDQLKMIARNKHISVRELEMYNNLLD
Ga0222717_1000068411F019756N/AMAQRSIDTLATQKHLIDLSTHSEGDVGLTDDFELQMIFDDILLVEYVDENEHGEVQRNGIYVPTNAITKAWRKAKVVLAGPKAEYAKKGDVVIFPNNLGVTVANIDVQGTTIKKGIFLNEDRLFGICKLKNDSTETNS
Ga0222717_1000068412F015734N/AMIVQRPTLDSLLLRNVCEVRFVRRRPRAGDGPTRRMLCTKSYEILNSINGRTTLNYRPPSGPIQVNEARDNLIVVWDILMQDYRAISMTSCDLIQDIPANDFWEYFNENIYPMSPEQKASFMNS
Ga0222717_1000068413F050011N/AMNVSLERFSDYIKPYLLQTVAICTDKKIIRKGKLRIFQIKQHYARLTLEDEVRTRIYEIPYPFDITTDGNRTTLCYKINEFLNFDDLELQVKFLDSTKKSKLYNENVYIMPLADVDL
Ga0222717_1000068424F047377N/AMSDDKSQEKETKAKIIKFIDAISGENYADANKYLQSAVEDKLETRIRQAAEKPLF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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