Scaffold Ga0222717_10000567

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10000567
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31626
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (84.75%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013822	Metagenome	268	Y
F019393	Metagenome	230	Y
F019910	Metagenome	227	Y
F024303	Metagenome	206	N
F048575	Metagenome	148	N
F052872	Metagenome	142	N
F066763	Metagenome	126	N
F083382	Metagenome	113	N
F084739	Metagenome / Metatranscriptome	112	Y
F090884	Metagenome	108	N
F097155	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000056717	F024303	AGGAG	MTENRFTNWLQKELKQHQKEKETMMAKAVKKNGAMILDEAQKKHLLDLFNAGNDFNQSYRETGIKYITAWDIEKLLDLLDDMKDMYGIAVKRSPEPDNEGNYYPCHWADHVWSDDPRAWKRKD
Ga0222717_1000056718	F083382	GGA	MSEKIKDRDTLVSVDDAGDVAKKEYESYIKQQQKDVSDDLDNQYYSEGEQYD
Ga0222717_1000056719	F019393	GGA	MSIMYNELRTYTNIPEFIQAHEGLWHMLGSKYKKLDKETVLIDNTKWKLIKGNMTCLKK
Ga0222717_1000056720	F048575	AGGA	MTALQNSIILDEEYEYEVSVLDLWKTSGEEDPYSAIYLAMNTLRYPNPNVPDEEIEEHLSELWEERWHEYYV
Ga0222717_1000056721	F013822	AGTAGG	MGMTEKELLRKNVKELQLQLRDAHIRIKELNEKCDELRKRLGLEKEFKTADGWAMPVENPDATHIKERK
Ga0222717_1000056723	F052872	AGG	MDNNYIIAFISEDKEIILEPLAKFNGDVMYFKSEIDAQDYIEKLYIKSGVDIEPMSDDDGLSIIRVQ
Ga0222717_1000056727	F090884	GAGG	MSEYIINITEEETIQCHVCNEVFNTNEITTDDYYFAWDKMVDVDCCAECAVKENDNESNL
Ga0222717_1000056728	F019910	AGGAG	MSRNINTIPSTRRHIVSYTIQVEWSDNPKLVELEHDMPNHVANAIDEWFGDIEDEEDLK
Ga0222717_1000056729	F097155	AGGAG	MKPSKYYIDASSFVEVTGELADFMMQEKLGEKYYEDCIYVDEDDVYNFTDEGQEMFNNYVDQMTRILGEVNIVHEDQLQEGE
Ga0222717_100005674	F066763	GAG	MKESKPVFSTADAELIRDLILFTLKTQDDFAIPSDKKKQLEALFHRLGRFKKSS
Ga0222717_1000056749	F084739	AGGA	MANNYTSKFFSGATNGVIVTTSDITRVTAIHAAAVTATGTFALSDSTGDKIKFQVPASGTADIHIGDMGIRFDGTVSVSAPSDGSSVTLILG