NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000552

Scaffold Ga0222717_10000552


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000552 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32063
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (25.58%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020156Metagenome / Metatranscriptome225Y
F029108Metagenome / Metatranscriptome189Y
F040577Metagenome / Metatranscriptome161Y
F041775Metagenome / Metatranscriptome159Y
F042280Metagenome / Metatranscriptome158Y
F066686Metagenome / Metatranscriptome126Y
F072343Metagenome / Metatranscriptome121Y
F099289Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000055237F020156N/AMLYEELQRLVYNENFKLDYANDILELFDGEIDDGHTDSTAYNKAMQDIDNVKNGEWDL
Ga0222717_1000055238F042280N/AMGFMKITNKWEETFEVNVGDWVGFKCDIEQCGRVKEIQRRGALIVENKNGFDGDYIGGDTEVLVGFDEVWQEHY
Ga0222717_1000055249F040577N/AMTELQKISGEICEIFQNKIQELTNEQAEILNMHNNSMNFCIELGDEDKAMWEARQTLKYLHEITK
Ga0222717_1000055251F072343N/AMHTRREIDHILDYINKIIAKNKTSNKENEDDRAMLEYLYEAINLKTNNGKYAKGMWTESPEFNCTNIYIK
Ga0222717_1000055253F029108N/AMKQINPNKYLIGKKKTGKGKVGAKGGLATPTGAFGGKSKFLKKKLDESN
Ga0222717_1000055265F066686AGAAGLTASTEYTILVGIDMKELQEMINDLQARLAIVGGGRIIITSENCSISLGEEHEDFEVQENRTDVEMYNQMWGQ
Ga0222717_1000055272F041775AGGAGMYLNDPYHLQVQDLDSREASELSMEFLNDNLIEPMIEQNLLDDDQLRMLLVVGGALKAIAQKAHAYEKMFDKDGKPPYYYN
Ga0222717_100005528F099289N/AMITIEDANNEQYFINPINVIYVKRRENFWKILLTNGEAIMTKNTEGAMAIVNAIKKYS
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