Scaffold Ga0222717_10000347

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10000347
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40040
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (89.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021268	Metagenome / Metatranscriptome	219	N
F093629	Metagenome / Metatranscriptome	106	Y
F097370	Metagenome / Metatranscriptome	104	Y
F100469	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000034710	F100469	AGGAG	MSEVTTNHKAYLNGCYVNFERNGKRAFGFVSEVFDEGFGVDMVVHDDKGFPGHNTDYTVFVKTDEVYR
Ga0222717_1000034712	F097370	AGGAG	MENSLNLYAKAFNSGMEATEICEILHEKCKFHDWTFMMADDSRAYHAGLKEADEIEYIRGVLDAMGFGMTAKIIIEGWTPDSLKTKGYLI
Ga0222717_1000034714	F093629	GAG	MARVIYQDAFDREELEGEIDFNKALQILKGFMGIEDTLDCLKAFEARYEKAEQEMFESDEYHCWYREWRYEIFSYNLLVEGFSKLFAPKEAS
Ga0222717_1000034718	F021268	GAGG	MSYLIHQFHLSNEASDHLNKVGWDGDFGDFPEIAIHRDVKFMGGSEKFEPWMSDHFASVARVTGVDTLEDVFHVGNGYGPEGSCIQKFTRMHSVSVGDIIVNEKCGTAWMVDGEGWSNVDFGRQF