Scaffold Ga0222717_10000314

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10000314
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42412
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (85.19%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010910	Metagenome / Metatranscriptome	297	Y
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F032992	Metagenome	178	Y
F093848	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000031432	F019646	AGG	MSNNNQNFEIHYTSDCCGAYVHSDADLCPTCFEHCEVIEDRIDYESSEAVHFESSLDFYGAG
Ga0222717_1000031434	F012114	GGAGG	MSHNNCIMPEVRKNVWVVIDAQTGDKLGEVGAVTESEARQLVSHHVLIPFRLSHIEE
Ga0222717_1000031435	F018906	AGGAG	MKTKVNPLKLNGTRFNTQAHKEQGRYVKHYYFSNGLGASIALHDGTYGGQHGYFELAILKYQHGTDPYTTNEIIYDTQINHDLGCVDVIGWLDFHEVASKLQEIRNYNTGDYNYNVK
Ga0222717_1000031437	F010910	GGAG	MLTIYTIFGIMVGFEGYDNGKVYFGVYTPNCEYGYVMTAEEIYLDTILKKE
Ga0222717_1000031440	F093848	GGAGG	MNELMQDSLYDTLDKLSTRLVQLYYVNSWELDDQDGMRVAGNILYVRNLRNE
Ga0222717_1000031441	F032992	GAGG	MNNAMDPNFRYYDCNNIIDEITGEEQDNLSIMVAVPRIDLSTAENRQENIAAISGIVEEQYRRGVQSFSYEEYTAE