Scaffold Ga0213922_1000092

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1000092
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54049
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F012040	Metagenome / Metatranscriptome	284	N
F016961	Metagenome / Metatranscriptome	243	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100009239	F005740	GAG	MKLIVQDIRSTIARAIGVCVDDARVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAIADCCGVGTVRNQWFEFQETGYGLLNGNQVCVGKQLIDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSNGVWIDGEKLTLALPYVQSTKKFTELTGVIREATNTVSRLYEYDATTTLETDLAVYDPDETLPQYRRSYLADRCNNEEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFYQWF
Ga0213922_100009244	F004664	N/A	MVIPGGWHYRVPETGIEIMGGSWPQLHEFVRNHYTANAIPIPSNLDTLITEYACRNGADCAFNEVEIPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEATRRASICSTCMYNRKPLGCTGCNARVLKEAVKTFSQHGSTPLDESLQSCEFCGCFIRSMVWFPIETLHKFTDATENKNLPAHCWKKRPCTDQ
Ga0213922_100009251	F012040	N/A	LTKNPSNQTKQDLLNLPEVNLSEWQTEGQQAELSAIMKNPILRMAIRIVSESIPVPMPVHGSKESDIIFAAGVTAGYAHCLENLRKLAVIETAKEPEATFEKSY
Ga0213922_100009263	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTSAETWSAITLAAGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAIADSSFTQTETIPSGVNEFPWIDGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRYADMGSGSGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVYSVNPSWTTAPYEAAFVVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLNVDCADPLEKKGQHYAEFIHAPEPIFTSQGMTIIFRRCTGALTQIICS
Ga0213922_10000927	F016961	AGG	MSTALTIISMAALMPLCVIAGIYVGHTLTIKSQNNKTNEQNRNRM