NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1004148

Scaffold Ga0213921_1004148


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1004148 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3066
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029416Metagenome / Metatranscriptome188Y
F034907Metagenome / Metatranscriptome173Y
F054003Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100414813F054003N/AMTETLKEYHFTDEQIDFLLQIVRDNAQYEEDEDREWMNELANQIEDQIVNHPTNE
Ga0213921_10041486F029416GAGMSDTLSKNIYRQLFTEDQWDLIYNFIGNALDSDEYDPEDVYAIRNKIHQLFEE
Ga0213921_10041487F034907N/AMITAILGGVIFSTFCTLFYIEDRMGGGLYDPDPSASFRHRNRK

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