NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1000110

Scaffold Ga0213921_1000110


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1000110 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32934
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (74.07%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003265Metagenome / Metatranscriptome496Y
F005738Metagenome / Metatranscriptome391Y
F015839Metagenome / Metatranscriptome251Y
F016520Metagenome246Y
F032632Metagenome179Y
F060848Metagenome132Y
F091625Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100011013F003265AGGMRALLFLLLLLLSGATAREACIVSDFYGLSWLGNPSERHQRLSEWLSTNGNACSSEQLVGIWNNLALWAGVADSGELRQKILYYYARAVEREKK
Ga0213921_100011023F091625GGAMNTPPIDQITLRDYFAAAALTGLLANGDRKSAVENAYAMADKMLLERDDDPA
Ga0213921_100011028F016520GAGGMKPTPVCPKGLTEFKCEVEGVDLVCFLEYTPKEEGSRDSYGLLNEPGTSENLELVNAYVKGTDVDIGHLLLQYLVDHITTTALEDFKNDDY
Ga0213921_100011031F032632N/AMKHSKYFHYPEVKNAKLNSRGEAVIDLIVAIVIGVGMAALLVAWWSA
Ga0213921_100011032F015839AGGAMNATYTAYAASDMYNAGYSCDGRPFIAEQFYVVIENAAGRRFRHTAIFNGTQEVVCPESGESYFSDLRQEASAKAERLVARVNAALQSGQFLAPTFWEEIDPAYGSDEYVYQGTEAKRLFAEKVAA
Ga0213921_100011040F060848N/AMTLSPIVNTDIKMPAKMLNALGLHETRCVVTGVKEVTEESVKAFLSDRYGEDFASTFDPKFLFNSQGA
Ga0213921_100011050F005738N/AMSFGVALRNALGLGLGGIATLITGTRDSGASVGNLLCENGDNLVQEDGGLILLEP
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