NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1000090

Scaffold Ga0213921_1000090


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1000090 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34832
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (74.60%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002420Metagenome / Metatranscriptome560Y
F010821Metagenome298Y
F011282Metagenome292Y
F012435Metagenome / Metatranscriptome280Y
F030055Metagenome186Y
F071017Metagenome122Y
F082396Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100009014F002420AGGMSFRESTVKYVKELMRAKTIHEVIAYELREAHLRKLEAETAAEYAYAAIQYNERRIARLTARLTEHTEEGDYA
Ga0213921_100009017F011282AGGAGMKKIKNITVVTGVYTNKDGQEKKRYMTIGSLFEDNGNLKIKFDAMPLAEGGWNGWANCYDLEEKTNSKGRFDDAPF
Ga0213921_100009023F030055AGGAMKHIETLPFNDARIMVDTGLDHVVIIHDDLLEELDCYFCPVTGNLWHAYLGQADLYNVLSAAVIDSLEREYKAKWEDDYV
Ga0213921_100009024F010821AGGAGGMTDFTFSPTDFNATTILVVANTPDAKQYLAERYGLGCVSIEIRKSAAPDFADSFEFQGLSYA
Ga0213921_100009028F071017N/AMNTEKSPIQSLIDTKTGNNLANLPLTKRLEIQETLRQTEARYWIKRFKKMAKEEGQSEASAWWQRTLSDLVKRRGQPAVDELRQRMNDEIRR
Ga0213921_100009041F012435N/AMEIDPVKYGVLWQKVESLEAKIDKLENSMDKLLELANQSKGGFWMGMAIVSALSSLIGYATNWLHKG
Ga0213921_100009052F082396GAGMTHRIEVNVQTGETKIIEYTPEEQAAHDAAVAAQQAEQPPAEPQ
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