NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214479_104446

Scaffold Ga0214479_104446


Overview

Basic Information
Taxon OID3300021914 Open in IMG/M
Scaffold IDGa0214479_104446 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellE14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1807
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.746Long. (o)-122.0257Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057890Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0214479_1044462F057890N/ANPKLMVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYNNRQESSNRIEPCYMKKQTKKQSGECPTGVQQEALERYQTLSYTDKAIYRAIGKEYFRKKVVYVNN

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