Scaffold Ga0210323_1079410

Overview

Basic Information

• Taxon OID: 3300021853
• Scaffold ID: Ga0210323_1079410
• Source Dataset Name: Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.189 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2353
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.187
  • Long. (^o): -123.687
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049440	Metagenome / Metatranscriptome	146	Y
F083351	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210323_10794101	F049440	GGA	MPTSSTDSTVDENRLSRSHRCQSQRLNGFYDRESVARCA
Ga0210323_10794106	F083351	GGAG	MRHPRCESGVSESGTHEVRVHAVRLGGRYRLDALRVFFSGRLQGLLEQEGASQEEVRSIA