Scaffold Ga0187838_1044713

Overview

Basic Information

• Taxon OID: 3300021851
• Scaffold ID: Ga0187838_1044713
• Source Dataset Name: Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - CONBC_RNA (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 577
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5564
  • Long. (^o): -110.8321

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187838_10447132	F013155	N/A	VAIALVNLAVAVWLLRLIIPVWQTLRKVVFVVDQYDFDKLVNQFLNGEKPLSETIHIKTTENKEEGYKEIIITRAYKKPLDPREVQENFVRQMAEKLQ