3300021851: Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - CONBC_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300021851
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116196 | Gp0213322 | Ga0187838
• Sample Name: Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - CONBC_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 62414154
• Sequencing Scaffolds: 37
• Novel Protein Genes: 40
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	8
Not Available	27
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Thermoproteus → unclassified Thermoproteus → Thermoproteus sp.	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Extremophilic Microbial Mat Communities From Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5564
  • Long. (^o): -110.8321
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005746	Metatranscriptome	391	N
F013155	Metagenome / Metatranscriptome	274	Y
F014979	Metatranscriptome	258	N
F021443	Metagenome / Metatranscriptome	219	Y
F043237	Metagenome / Metatranscriptome	156	Y
F051572	Metagenome / Metatranscriptome	144	N
F054065	Metatranscriptome	140	N
F075483	Metagenome / Metatranscriptome	119	Y
F100050	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187838_1000082	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	891
Ga0187838_1001221	Not Available	512
Ga0187838_1006454	Not Available	792
Ga0187838_1009416	Not Available	580
Ga0187838_1016753	Not Available	521
Ga0187838_1018762	Not Available	701
Ga0187838_1025754	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	583
Ga0187838_1028244	Not Available	566
Ga0187838_1037856	Not Available	1030
Ga0187838_1043651	Not Available	536
Ga0187838_1044713	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	577
Ga0187838_1046617	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	514
Ga0187838_1049650	Not Available	760
Ga0187838_1053640	Not Available	1184
Ga0187838_1056180	Not Available	543
Ga0187838_1062630	Not Available	678
Ga0187838_1063606	Not Available	737
Ga0187838_1064596	Not Available	657
Ga0187838_1079212	Not Available	694
Ga0187838_1082928	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	786
Ga0187838_1092744	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	959
Ga0187838_1095049	Not Available	611
Ga0187838_1102377	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Thermoproteus → unclassified Thermoproteus → Thermoproteus sp.	1652
Ga0187838_1104296	Not Available	788
Ga0187838_1108477	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	770
Ga0187838_1117313	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	936
Ga0187838_1124265	Not Available	651
Ga0187838_1126177	Not Available	572
Ga0187838_1133051	Not Available	608
Ga0187838_1135330	Not Available	557
Ga0187838_1140157	Not Available	505
Ga0187838_1149102	Not Available	630
Ga0187838_1155223	Not Available	765
Ga0187838_1156884	Not Available	674
Ga0187838_1160365	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	724
Ga0187838_1167963	Not Available	540
Ga0187838_1174572	Not Available	736

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187838_1000082	Ga0187838_10000821	F013155	VIVVAIALVNLAVTVWLLRLLYPVWQTLRKVVFAMEHYDFDRLVNQFLNGEKPLAENVVIKTIDKKEEGYREISIIRTYKRPLDPREVQENFVRQMAEKLQ
Ga0187838_1001221	Ga0187838_10012211	F005746	VAQSGSTSKFLQLIQVWRVALTAYGRLKVHPTPEDVEKFERAVETALTLTVELPSGRVVEVDTEDWRSRFPWRAFFGFSPRDVLPEVRIQREIQPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFRPEPGSVRAHGNVFCRVQPDG
Ga0187838_1006454	Ga0187838_10064541	F005746	MLHPSTALTLRLLAAFPLVSYRYRRLIAEAVDRWVRSSGFEWAKARVNTLVQWLLKIRAGESPRKPDWWSDRYLLYAYRVAQSGPTSKFLQLIQAWRVALTSYGRLKTDPTPEDVEKFEKAVETALTLTVELPSGRVIEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQRKIEPLNPLSLKLVDRRGRWTPVGEELMRDAWWVMQDHILHPPGTVP
Ga0187838_1009416	Ga0187838_10094161	F005746	AVDRWVRSSGFEWAKARVSALVQWLLKIRAGESPRKPDWWDDRYLVYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKTEPTPEDVEKFERAVETALTLTVELPSGRVIEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQREIKPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHILHPPGAVPAYWPML
Ga0187838_1016753	Ga0187838_10167531	F005746	WRVALTAYGRLKTHPTPEDVEKFERAVETALTLTVELPSGRVIEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQREIKPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFRPEPGSVRAHGNVFCRVQPDGKARFYYAPPRWLQFLVDPW
Ga0187838_1018762	Ga0187838_10187621	F014979	VEISEPKSLAGRLGEFVGRLVAPDGIGFKLKAPKRLDYPTLAAWLDLIGPNAVRIWDQTLLRDLVALLPGQRYQGSNPGGLPKEYVDKFLVEYFARESEVQPPRLYAVDPEPRVRTRIEVLHALSLVRPREPTAAEWAPRGAAEVGPAGEPVRAHHYESVGSSRTRRRSPGWLRRVLEAARASGIDRVWRLIRSGRWSRSGGQGQEA
Ga0187838_1025754	Ga0187838_10257542	F013155	VTVWLLRLLYPVWQTLRKVVFVLDQYDFDRLVNQFLNGEKPLAENLVIKTIDKKEEGYKEVIITRAYKRPLDPREVQENFVRQMAEKLQ
Ga0187838_1028244	Ga0187838_10282441	F021443	MKYLLNDDKLTFIFRSSYVTCHKYIYGYYQTNGMLPFAIMDLAFRIIKQQKRESMILKKRRSIIHLLNYIDTLNSNFNSNEFGVTLFLKNDYKTQLIRNLYLYRNSYRRRYYEDLYKDSLKVIERKNSCIIRLEDDYDNTIQPKNLNLASTLMHILEKKEVDM
Ga0187838_1037856	Ga0187838_10378562	F051572	MTSGKTHGGPFAEVRTLADIVLETGCKKSLQFLNTHFDLCVLAILIKSIPAGSMVRLRPEIVRRLVEEVAAAVGGGDRERIRNALLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFFMKLEA
Ga0187838_1043651	Ga0187838_10436511	F005746	IAKAVDRWVRSSGFEWAKARVSTLVQWLLKIRAGESPRKPDWWDDRYLEYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKTHPTPEDVEKFERAVETALTLTVELPSGRVVEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQREIQPLNPLSLKILDRRGRYTPVGEELMRDAWWVM
Ga0187838_1044713	Ga0187838_10447132	F013155	VAIALVNLAVAVWLLRLIIPVWQTLRKVVFVVDQYDFDKLVNQFLNGEKPLSETIHIKTTENKEEGYKEIIITRAYKKPLDPREVQENFVRQMAEKLQ
Ga0187838_1046617	Ga0187838_10466171	F013155	IVVAIALANLAVTVWLLRLLFTVWRTFQKIVFTLDDFDFERLAKQYLDGEKPLSETVHVKVSENKEEGYKELIVTKVYRKPLDAKEAWEGIVRQMAKEMQ
Ga0187838_1049650	Ga0187838_10496501	F005746	DRWVRSSGFEWAKARVSALVQWLLKIRAGESPRKPDWWDDRYLAYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKTNPTPEDVEKFERAVETALTLTVELSSGRVVEVDTEDWRSRFPWRAYFGFTPRDVLPEVRIQREIKPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHILHPPGAVPAYWPMLPVLPDFRPEPGSVRAHGNVFCRVQPDGKARFYYAPPRWLQFLVDPWARELYRALQRIPQDYT
Ga0187838_1053640	Ga0187838_10536401	F021443	MKYLLNDEKLTFTFRSSYVTCHNYGYGYYQTNGVFSFAIMDLVFRIIKQQKRESIILKKRKPIIHLINYVDILNFNYISDKFDITLPLKNNYQTQLIRNLYLYRCLYRREYYKDFYKDSLIVIEHENSCTIRTEYEYANRIQPKNSNLATMLIHILEKEGIDTINGDGIIFYCVFLM
Ga0187838_1053640	Ga0187838_10536402	F021443	MKCLLNDEKLIFIFESSSVLFYNGYSYYQINGILSFAVMDLAFKIINQQKRKFIILKKRKPIIHLLNYIDILNSNSNSNKFDITFSLKNNYKTQLIYNLHSYRNSYRRRYYKDFYKDGLAVIERENLCIIRLEHNYASEIEPKNSNLASMLIHILDKEGIDMIV
Ga0187838_1056180	Ga0187838_10561801	F021443	NDEKLTFTFKSSYVICHNYGYGYYQTNGMLFFAVKDLAFKIINQQKRNSIILKKRRSIIHLLNYIDILNFNFNSNKFDITFPLKNDYEPQLTHNLYLYRRGYYNDFYKNGLKVIESKNLCIIRLEYDYASRIQPKNSNLVTMLMHILVKKKIDMIVGDGIIFYCVFLM
Ga0187838_1062630	Ga0187838_10626301	F021443	MKYLLNNKKLTFVFRFPYVTCYSFNYGCYQTNGILSFAATDLAFKIISQQKRKSIVLKKRKPIIHLLNYIDTLNSNFNSNNFHITFSLKNKYEKQLTYNLYLHRNSYRRRHYKDFYEDGLKVIERENLCIIRLEYDYANEIQLKNLNLVTMLMHILEKEEINMTVGDGIIFYCVFLM
Ga0187838_1063606	Ga0187838_10636061	F005746	IAEAVDRWVRSSGFEWAKARVSALVQWLLKIRAGESPRKPDWWDDRYLNYAYRVAQSGSTSKFLQLVQVWRVALTAYGRLKTDPTPEDVEKFERAVETALTLTVELPSGRVIEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQREIKPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFRPEPGSVRAHGNVFCRVQPDGKARFYYAPPRWLQFLVDPWARE
Ga0187838_1064596	Ga0187838_10645961	F005746	GFEWAKARVSSLVQWLLKIRAGESPRKPDWWHDRYLHYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKTHPTPEDVEKFERAVETALTLTVELPSGRVVEVDTEDWRSRFPWRAYFGFTPRDVLPEVRIQREIQPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHILHPPGSVPAYWPMLPVLPDFRPEPGSVRAHGNVFCRVQPDGKARFYYA
Ga0187838_1079212	Ga0187838_10792121	F005746	PLVSYRYRRLIAEAVDRWVRSSGFEWAKARVSTLVQWLLKIRAGESPQKPDWWSDRYLSYAYRVAQSGPTSKFLQLVQAWRVALTSYGRLKTDPTPEDVEKFERAVETALTLTVELPSGKVVEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQRRIEPLNPLSLKLVDRRGRWTPVGEELMRDAWWVMQDHLLHPPGTVPAYWPMLPVLPDFRPEPGSVRAHGNVFCRVQP
Ga0187838_1082928	Ga0187838_10829281	F075483	MIELLLVQTITNLALAAVVIKLRRELWPMIAGADPPGSGGVGFWIRSIDVLLVETPLLRVAKSVTRVRWLFSEELHLTYRLRVYDVAMDPLHRHHYVRWKAWMQGDDRYRCEVEKPRGLARLYTKAIDVFCREVKKDEKREVVILPSRWRKRRY
Ga0187838_1082928	Ga0187838_10829282	F013155	YQVVVIAIALANLAVTVWLLRLLIPIWQTLRKVVFALDNYDFDKLAKQFLNGEKPLAESVVVKTSEKRDEGYREISIIRTYKKPLDAKEVWEGIVRQMAEKLQ
Ga0187838_1092744	Ga0187838_10927441	F013155	VAIALANLAVTVWLLRLLIPIWQTLRKVVFALDNFDFDEISRKFLNNEKPLAESVIVKTSEKKEEGYREISIIRTYRKPLDVKEIQEGFVRQMAEKLQ
Ga0187838_1092744	Ga0187838_10927442	F075483	MIELLLVQAVTTAALAFFVIKLRRELWPMFAMAKSGEVGFWVRTVDVLAVETPQLDASKVVIKVRWLFSEEIHMKYRLRIYDVAMHPYRRHHYVRWRAWMQGDNRYKCEVEKPRGLSRIYTKAIDVFCREVKKDEKKEVVILPSRWRKRRYRHWTKPEPSRGAPS
Ga0187838_1095049	Ga0187838_10950491	F014979	GEFVGRLIAPDGVEFKLKAPSRLDYSTLRAWLDLVGPRAVRAWRQSLVRDVLALLPGERYPGSNPGGFPKEAVDAFITEHYAREQERQPPRLFAVDPETRVRTRIEVLYALSVVRPREPTATEWAPRGAAEVGPAGEPLRAHHYESVSPKRRPERSPGWLRRVLDAAKAAGLPRIWRLIRTGRWSRSGGQGQEA
Ga0187838_1102377	Ga0187838_11023773	F100050	MDVIVRYMLATLLALVGGLVGFYLIPYEPFGAVGNVLFMGALFGFIAGFLGFTGFFGNVVNAFLVSFILWFVLPGQWFVIWTGGNAGYMVGNVLGQLGRLSAVKKIEAEAL
Ga0187838_1104296	Ga0187838_11042961	F043237	MDLEKTSRYIAQLSRHGYKYAILGELSNYNREFVKKIDLEGFVFYLCRLSSKREVIAYCLQKTDKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFISDCLNAIERASSLTYPSPKLYIARVNQILRQLYSVLAYTYNDRERVRAIKRKVKHWVVEALKRHGLKPKDAMLDYARYIVKFSDVLRKKRSKKSKS
Ga0187838_1108477	Ga0187838_11084772	F043237	VKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLSAKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLRVIERASSLKYPNHKMYTIKVNEALRNLYRILAYTYNDKERLRAIKRKVKHLFVSALKENYGIEPKKAMEEYRRFVVKFSDALKRKQRANSSTS
Ga0187838_1117313	Ga0187838_11173132	F075483	MIELLLIQTITNLALAAVVIKLRRELYPMIATAGQPYASFWVRSVDVLVLKVPQFEAAKTVIRVRWLFTEELHLTHSLRIYDVAMDPLGRYFYKEWREWMQGNSKYDCRVKKPRGLSRLYTKAIDVFCKEKKPPKEVVILPSRWRKRRYKRLTKPEPSGNAPP
Ga0187838_1124265	Ga0187838_11242651	F005746	RLLAAFPLVSYRYRRLVAGAVDRWVRSSGFEWAKARVSTLVQWLLKIRAGESPRKPDWWDDRYLNYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKTDPTPEDVEKFERAVETALTLTVELPSGRVIEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQREIKPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHILHPPGTVPAYWPMLPVLPD
Ga0187838_1126177	Ga0187838_11261771	F054065	MLHPSTALTLRLLAAFPLVSHRYRRLIAEAVDRWVRSSGFEWAKTRVSSLVQWLLKIRAGESPRKPDWWDDRYLRYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKTHPTLEDVEKFERAVETALTLAVELPSGRVVEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQ
Ga0187838_1133051	Ga0187838_11330511	F005746	LVQWLLKIRAGESPRKPDWWDDRYLEYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKTDPTPEDVEKFERAVETALTLTVELPSGRVVEVDTEDWRSRFPWRAYFGFSPRDILPEVRIQREIKPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHILHPQGTVPAYWPMLPVLPDFRPEPGSVRAHGNVFCRVQPDGKA
Ga0187838_1135330	Ga0187838_11353301	F005746	YGRLKTDPTPEDVEKFERAVETALTLTVELPSGRVVEVDTEDWRSRFPWRAYFGFSPRDILPEVRIQREIKPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHVLHPPGTVPAYWPMLPVLPDFRPEPGSVRAHGNVFCRVQADGKARFYYAPPRWLQFLVDPWARELYRALQRIPQDYTYNQ
Ga0187838_1140157	Ga0187838_11401571	F005746	PRKPDWWDDRYLQYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKVHPTPEDVEKFERAVETALTLTVELPSGRVIEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQREIQPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFR
Ga0187838_1149102	Ga0187838_11491021	F005746	LRLLAAFPLVSYRYRRLIAEAVDRWVRSSGFEWAKARVSALVQWLLKIRAGESPRKPDWWDDRYLEYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKTVPTPEDVEKFERAVETALTLTVELPSGRVVEVDTEDWRSRFPWRAYFGFSPRDVLPEVRIQREIKPLNPLSLKILDRRGRYTPVGEELMRDAWWVMQDHVLHPPGAVPAYW
Ga0187838_1155223	Ga0187838_11552231	F021443	ICYSFNYGYYQTNGLLSFAVIDLAFKIIKITNQQKRKSMTLKKRKPIIHLLNYVDTLNSNFNSNEFDITFSLKNNYESQLIHNLHLYRNSYRRRYYKDFYKDGLKVIEYKNLCIIRTEYDYASRIQPKNLNLVTMLIHILDKEGIDMIVGDGIIFYCVFLM
Ga0187838_1156884	Ga0187838_11568841	F054065	MLHPSTALTLRLLAAFPLVSYRYRRLIAVAVDRWVRSSGFEWAKARVSTLVQWLLKIRAGESPRKPDWWDDRYLEYAYRIARSGSTSKFLQLIQVWRVALTAYGRLKTSPTPEDVEKFERAVETALTLTVELPSGRVVEVDTEDWRSKFPWRAYFGFSPRDILPEVRIQREIKPLNPLSLKI
Ga0187838_1160365	Ga0187838_11603652	F013155	VAIALANLAVTVWLLRLLIPVWQTLRKVVFVVDQYDFDRLVNQFLNGEKPLSETIHIKTTENKEEGYKEIIITRAYKRQLDPREIQENFVRQMAKKLQ
Ga0187838_1167963	Ga0187838_11679631	F054065	MLHPSTALTLRLLAAFPLVSYRYRRLVAEAVDRWVRSSGFEWAKARVSALVQWLLKTRAGESPRKPDWWHDRYLSYAYRVAQSGSTSKFLQLIQVWRVALTAYGRLKTTPTPEDVEKFERAVETAQTLTVELPSGRIIEVDTEDWRSRFPWRAYFGSSPRDVLPEVRIQRE
Ga0187838_1174572	Ga0187838_11745721	F021443	MKWLLNSKRLTFIFRYPYVICYSFNYGCYQTNGMLSFAAIDLVFKIIKIMKQQKRKSMTLKRRKSIIHLLNYVDILNSNFSNNEFDIAFFLKNNYQTQLIHNLYLHRCLYRRKYYKDFYKDGLKVVERKNSCIIRLEHDYASEIHPKNSNLAAMLLHILEKKEFDTMNVNGIIFYCVFLM