Scaffold Ga0226832_10114903

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10114903
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 996
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052655	Metagenome / Metatranscriptome	142	Y
F063766	Metagenome	129	Y
F105355	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_101149032	F052655	AGGAG	MTVLILVTGLVLGMFNYEPMWFDTRPHYYHMTYTSKAQCQEARELRQGILKTEGTVCTDKHEMYKTK
Ga0226832_101149033	F105355	AGAAGG	MEIPNSCDENDKLTILLNIRQGTQSTTYSVSNLPDWYDMLGIFAIYGVVAMTIFYSGLWIASKYKGEQK
Ga0226832_101149034	F063766	GAGG	MSLNKQKKLEYIAQILDHVKDGSIELDHNDSILLEVALDFIEDLKEGQSDGNT