Scaffold Ga0226832_10032609

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10032609
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1749
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F049924	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_100326091	F097503	AGGAG	MVGHTRTNMDCTTEAVVLFEDIVEMFEQRMMEGCIANEFKCTYNIEKGEFIAEIDGKYYVAMTREK
Ga0226832_100326092	F060975	AGGAG	MGKTIRRNPVARNSEKFNKPKTIRDRKKDFYRPDSKRDLEEAIEDLSFDEDNRKDAIIIQYQDDLARSQEDGWPYED
Ga0226832_100326093	F049037	GGAG	MTESPCDTCHNYWLCMEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLRTFPLIEDPLGFYFIRHIDGAIENTYTGKSSKRLRNAQAACREVVLEAKVRESTARTQNNVGRVVQREMGRNLARVCEQEDPGEN
Ga0226832_100326094	F049924	GAG	MRKYATQKLIAKDVPVHLKHLFEGQNLRFRGRGSRVKAVETVLKSKKLREKYLWEGWKEMPLPKVMKGLTYRFNQDLPLEFADRMSVYCR