Scaffold Ga0190354_1000207

Overview

Basic Information

• Taxon OID: 3300021590
• Scaffold ID: Ga0190354_1000207
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10269
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038026	Metagenome	166	Y
F056227	Metagenome	137	N
F096390	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190354_100020720	F038026	GAGG	MLKFMIDKNEDEYILIIEYEDRAERLLASSLKDLVQVMADTTLYNFEGKSKYFEQSHYAKVEINRRVVLDSQ
Ga0190354_100020726	F056227	N/A	MEDKDNQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHMDILSIFDTHGLEYLYVKYPQENREEVKVPSAENYRDVDIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0190354_10002077	F096390	GGAGG	MADIIKEIINLFVYPITHEIEAHGKLLTDEEKQDLLEKEKKRYERELIRIFEKFDRL