NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226655_10136286

Scaffold Ga0226655_10136286


Overview

Basic Information
Taxon OID3300021561 Open in IMG/M
Scaffold IDGa0226655_10136286 Open in IMG/M
Source Dataset NameAnaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG074 spades
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1031
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameUniversity of Toronto, Toronto, Ontario, Canada
CoordinatesLat. (o)43.5479Long. (o)-79.6609Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072819Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0226655_101362862F072819GGAMCHGIGVCIRRRDQTGDRVSIRVGITTRRGIVNVTLIHGEDMLQDQEKADKASFKAALLENENTVKELIYFCRNNLNDLTVQCFTHKRFMSVQAFIDALRLVYQELGVEGATGNVSDFVLFVAGEHRDNVYASHVCAITDEHRQVFAVRLGMDIEEIEANLSKLTWRIDGGI

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