3300021561: Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG074 spades

Overview

Basic Information

• IMG/M Taxon OID: 3300021561
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0130338 | Gp0238866 | Ga0226655
• Sample Name: Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG074 spades
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Toronto
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1098453871
• Sequencing Scaffolds: 15
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaU1.Bin066	1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR1 → candidate division CPR1 bacterium ADurb.Bin160	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes From Anaerobic Digester Of Solid Waste
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: University of Toronto, Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.5479
  • Long. (^o): -79.6609
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010627	Metagenome / Metatranscriptome	301	Y
F018007	Metagenome / Metatranscriptome	237	Y
F047698	Metagenome / Metatranscriptome	149	N
F051992	Metagenome / Metatranscriptome	143	Y
F053881	Metagenome / Metatranscriptome	140	N
F066219	Metagenome / Metatranscriptome	127	Y
F069433	Metagenome / Metatranscriptome	124	N
F070633	Metagenome / Metatranscriptome	123	N
F071210	Metagenome / Metatranscriptome	122	N
F071272	Metagenome / Metatranscriptome	122	N
F072819	Metagenome	121	N
F074119	Metagenome / Metatranscriptome	120	N
F080801	Metagenome	114	Y
F085739	Metagenome / Metatranscriptome	111	N
F086459	Metagenome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0226655_10012771	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	6360
Ga0226655_10031855	All Organisms → cellular organisms → Bacteria	3018
Ga0226655_10073705	All Organisms → cellular organisms → Bacteria	1585
Ga0226655_10100633	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1269
Ga0226655_10111368	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaU1.Bin066	1184
Ga0226655_10136286	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	1031
Ga0226655_10172993	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	877
Ga0226655_10190822	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR1 → candidate division CPR1 bacterium ADurb.Bin160	822
Ga0226655_10275501	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	648
Ga0226655_10282781	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	638
Ga0226655_10321108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	588
Ga0226655_10356375	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	549
Ga0226655_10381299	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	524
Ga0226655_10385570	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium	520
Ga0226655_10401778	Not Available	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0226655_10012771	Ga0226655_100127711	F047698	QMQQATAIVGVLIGFLILTQIGIFVCDAMIGAATIDNESKLHDAQEEAIATFVQCLSIVRILLIVAIVAVVFQYLQGAGLIPGFGGPRQGGY
Ga0226655_10031855	Ga0226655_100318552	F051992	VEILEERVVSSRNRINFRGGKRKMSNYNLRPRERHPTRLLDLTNRIRIVK
Ga0226655_10053184	Ga0226655_100531841	F066219	MKKVFLVLLILCIGCLIHANIVEFFESIPPVLRYAVGTVITVYALSWAYSWFFDPIIVVTDTKYGAFNFGPFIVIEPCIWYSNDVEWRNTVLNHEYTHYVQHAVYGPILSVTYPILALYSNIKSGNQWDDNYWEIQAMQAPDTAPSWKPLAVWVW
Ga0226655_10073705	Ga0226655_100737053	F018007	MFNGWKITNILDVGLCELDTADGPYNKTGYRLEHREDGFAITVGLMEYISGWSALEILYWLHEKQAIPRRYDN
Ga0226655_10100633	Ga0226655_101006332	F080801	MADEIKIPELVVKTTKSQFRLRCHAVSWAKEYGGFIKLHRRHSKECPGMLLLSVTGPDTAVKSLRATLYQPDVDAEFLLQNGDTSQQMIKARLLFGGRPAVYSAAIAKLASGVIHMVALAKIPGLMPNMSDDHLWSELAGSRYTTPLLRTWIPWLKEALAKDRKIIVGEGFA
Ga0226655_10111368	Ga0226655_101113682	F085739	MREIPIAGETCCANCVHDATCSHRSALPGIALICDHFVNRTFPPEVQDAIQAGACCHICGAPAIIGGGGRVTCGNCLLAQAAAKAKIGDKIIKEWRGTVTTPPAPMFEAGADPDEVEEKEGV
Ga0226655_10136286	Ga0226655_101362862	F072819	MCHGIGVCIRRRDQTGDRVSIRVGITTRRGIVNVTLIHGEDMLQDQEKADKASFKAALLENENTVKELIYFCRNNLNDLTVQCFTHKRFMSVQAFIDALRLVYQELGVEGATGNVSDFVLFVAGEHRDNVYASHVCAITDEHRQVFAVRLGMDIEEIEANLSKLTWRIDGGI
Ga0226655_10172993	Ga0226655_101729932	F072819	RGIANVTLIHGEEMFQDQVKAQEVSFRIARIEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQALVDTLCEVYRDLGVEGDKGNVSVFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI
Ga0226655_10190822	Ga0226655_101908221	F071210	MKEKRWLGTQKYEIHCFYCGGFHITGNCPQIVKAMKGWKYDRSCPETGHIKIVPNGDEYPTVLAFNGYHYRVVGLWGIPGRLLWLELERFCGDTIVAATFCPDELMEMDLGMSDDEQLSAWLGGLPFLSVSPSEFNRSEAEVDVKKT
Ga0226655_10275501	Ga0226655_102755011	F069433	RSFLNNEFTRRGKPTGSYTDTTITALVTEIRKVHVDELRSELAACKSGRGEGGYCPQDNSGCMDFTDPVITALVTEIRGVHFRQARSRLEALMTSCICETEQCQYCADCGYYYQTCSHAGVACDDHKYNECSHSINNYWICASINLPSGAQHPYKAASGDPLSTTPWDGYVPWDWCVYTPPGSNWGSCEYQGGHNHTAWNCKCNPYTW
Ga0226655_10282781	Ga0226655_102827812	F074119	MSDIQVFEVLAKILPYLVSLGIGAFAGXELVKTKIHELAEFFNVVDEALYDDAVTEKEFRAIWEKGRALFGTGIKKGA
Ga0226655_10321108	Ga0226655_103211082	F010627	PPRLTNKASETAGSEDAIDDESVPIVTVAADKQRASLIEGSPVQLAPLWEPAGATVACKVIIGTKGKIAELDTGAQLCEAFDWDKLRYQPLLKAGKPVRVKTEVEVRFDPRK
Ga0226655_10356375	Ga0226655_103563751	F070633	PKRCSSSYNLVVVPLSDGIMTSIERDNFNIAMDTEGRLILTRKDRKVQLVFDYGSGFMTGVLGGVLYDTFEIPKKEETDYHG
Ga0226655_10356375	Ga0226655_103563752	F053881	MKAISKISKDSLGEKEGKLYSKIYRHIIQNFEIDEIAADQIAKAIVNQKCILLPRLLSGENVDISLASESIRKWLSEYRLTPKSREKDKEVTINLSAII
Ga0226655_10381299	Ga0226655_103812991	F072819	RGIANVTLIHGEEMFQDQIKAQEVSFRIARLEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQALIDALCEVYRDLGVEGDKGNVSAFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI
Ga0226655_10385570	Ga0226655_103855702	F071272	GNAHVIPTEVFDKIISGEMKITDMDDWEIITRTAFSEWLRGLETAAKTRVYKAAVDHIADTMAAGAWQDGPAPKDGSWILGLFYGLPYVVCYDSWEISEEGGPKETEEGWCLAGQDMHPMDQDEPEKWARIIHPNRHMPASWDGPGD
Ga0226655_10401778	Ga0226655_104017782	F086459	MIYAKDRILSELDSAGAQLASLAADLKASRAVLQARLKRPPPFMPLEEYDCHFANAFTHIEKAKMAVRAMHPVCHQADFLKKKTEKNRR