NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10198755

Scaffold Ga0126371_10198755


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10198755 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2099
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029830Metagenome / Metatranscriptome187Y
F097838Metagenome104Y
F100922Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_101987552F097838GAGGMRDAITGIGLVAFGTIAVLALCIGVCALTEAVIGLVA
Ga0126371_101987553F100922N/AMTDEIIFIAAILTLASAILTALYGVAGTALSQPQRQSHRHRPWNFK
Ga0126371_101987554F029830GAGMTMTNKVRRPVRFTPDNLLRVRQMAAEGKSSIEIAQSMGSTSASVKNVCCRHKIKIPHKRRLSKLVAYLPASLSSELQRKAENFQISASMLASRLLAAIVASNIYEAVLDDRD
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