Scaffold Ga0126371_10046362

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10046362
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4144
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015808	Metagenome / Metatranscriptome	252	Y
F017283	Metagenome	241	Y
F036515	Metagenome	169	Y
F076733	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_100463625	F036515	AGGAG	MPNQPLHFPSDRETIIASILKSRLDLRRLQSDLHNTISLSRGMISQSLDLIAKADKVLARSRFLIPPRY
Ga0126371_100463626	F076733	N/A	MTYSSSWYGIARECRMRAAEARARADEMKEAQPKAIMLGIAADYEELADWFEKNSIPWWDKKPTAR
Ga0126371_100463628	F015808	AGGAGG	MKHPATSCNCVLAVNPLALRWRCSVCGKTEIMNISNVAANCDGEIRRVEPEVVSHQSTTGRN
Ga0126371_100463629	F017283	GGTGG	MPNAKAQAMLNPLKWKYQDQAGLLLLTIAGAGFGIAISYRSGNEWLGTLIWALISAVVLGGAFYFHRVGR