Scaffold Ga0126371_10043568

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10043568
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4266
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003429	Metagenome / Metatranscriptome	487	Y
F006603	Metagenome / Metatranscriptome	369	Y
F011068	Metagenome / Metatranscriptome	295	Y
F012997	Metagenome	275	Y
F072608	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_100435682	F006603	AGG	MEWEEALVRAWGGEIPQSAAHYRRKAARARQIAEGVTTRAIKARLLDEAVHCDQLAAEADRRPGEAENWAADR
Ga0126371_100435684	F011068	GGA	MKNSPYLDKPFVPLAVALRSMLAETEAKLATAAPAERPWLQQRAEVLRQWLTPKSTIPLS
Ga0126371_100435687	F072608	GGAG	LGTQSAEYHRAAAARARKLRADATTRWLKERLEDEIAQHEQLAEEIERATKADADPATAEADAPVLSSETPGR
Ga0126371_100435688	F012997	GGAGG	MPSLIDEVWEWLGRAEQAREVAEGLTDPGAKQAVLQRGKL
Ga0126371_100435689	F003429	AGGAG	MGQQRGLLTPEERARITERQDMLIERFVEHRDAVAGGQEARAKELLAEIDGLFREKEEVEKWAAVGSA