Metagenome / Metatranscriptome Family F072608

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072608
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	73 residues
Representative Sequence	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Number of Associated Samples	88
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.65 %
% of genes near scaffold ends (potentially truncated)	29.75 %
% of genes from short scaffolds (< 2000 bps)	90.08 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.116 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (21.488 % of family members)
Environment Ontology (ENVO)	Unclassified (46.281 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.074 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.54% β-sheet: 0.00% Coil/Unstructured: 54.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00106	adh_short	1.65
PF17195	DUF5132	1.65
PF02586	SRAP	1.65
PF03330	DPBB_1	0.83
PF13436	Gly-zipper_OmpA	0.83
PF04226	Transgly_assoc	0.83
PF04909	Amidohydro_2	0.83
PF13229	Beta_helix	0.83
PF00872	Transposase_mut	0.83
PF02195	ParBc	0.83
PF09371	Tex_N	0.83
PF13419	HAD_2	0.83
PF13472	Lipase_GDSL_2	0.83
PF13407	Peripla_BP_4	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.65
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.83
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
All Organisms	root	All Organisms	33.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
cellular organisms	root	All Organisms → cellular organisms	33.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.97 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.31 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.31 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.83 %
Alphaproteobacteria bacterium 13_1_20CM_4_65_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.31 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %
Alphaproteobacteria bacterium 13_1_20CM_4_65_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.48 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.83 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %
Alphaproteobacteria bacterium 13_1_20CM_4_65_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.88 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	2.48 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.83 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.83 %
Alphaproteobacteria bacterium 13_1_20CM_4_65_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	0.83 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320005\|FACEOR_FY84VJD01D2KVF	Not Available	508	Open in IMG/M
3300000955\|JGI1027J12803_108435954	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300002245\|JGIcombinedJ26739_101778049	Not Available	517	Open in IMG/M
3300003505\|JGIcombinedJ51221_10299860	Not Available	654	Open in IMG/M
3300004092\|Ga0062389_100917915	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300004152\|Ga0062386_101716965	Not Available	524	Open in IMG/M
3300004633\|Ga0066395_10089482	Not Available	1461	Open in IMG/M
3300004633\|Ga0066395_10151911	Not Available	1173	Open in IMG/M
3300005172\|Ga0066683_10636529	Not Available	641	Open in IMG/M
3300005180\|Ga0066685_10420098	Not Available	929	Open in IMG/M
3300005434\|Ga0070709_10049878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2619	Open in IMG/M
3300005435\|Ga0070714_100452746	All Organisms → cellular organisms → Bacteria → Proteobacteria	1219	Open in IMG/M
3300005436\|Ga0070713_100408854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1268	Open in IMG/M
3300005436\|Ga0070713_102079537	Not Available	551	Open in IMG/M
3300005437\|Ga0070710_11343485	Not Available	533	Open in IMG/M
3300005439\|Ga0070711_100309634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1258	Open in IMG/M
3300005552\|Ga0066701_10221174	Not Available	1166	Open in IMG/M
3300005561\|Ga0066699_10127784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1711	Open in IMG/M
3300005602\|Ga0070762_10158164	All Organisms → cellular organisms → Bacteria → Proteobacteria	1360	Open in IMG/M
3300005764\|Ga0066903_100153814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3313	Open in IMG/M
3300005764\|Ga0066903_102186962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1066	Open in IMG/M
3300005764\|Ga0066903_104843223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	715	Open in IMG/M
3300005921\|Ga0070766_10323325	Not Available	995	Open in IMG/M
3300006028\|Ga0070717_10242225	Not Available	1591	Open in IMG/M
3300006175\|Ga0070712_100282423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1337	Open in IMG/M
3300006175\|Ga0070712_100295798	Not Available	1308	Open in IMG/M
3300006175\|Ga0070712_101763566	Not Available	542	Open in IMG/M
3300006176\|Ga0070765_100233714	Not Available	1680	Open in IMG/M
3300006176\|Ga0070765_100372249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1330	Open in IMG/M
3300006755\|Ga0079222_10071606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1708	Open in IMG/M
3300006755\|Ga0079222_10229955	Not Available	1146	Open in IMG/M
3300006796\|Ga0066665_11620906	Not Available	510	Open in IMG/M
3300006800\|Ga0066660_11146612	Not Available	613	Open in IMG/M
3300006800\|Ga0066660_11411509	Not Available	546	Open in IMG/M
3300006804\|Ga0079221_11666843	Not Available	518	Open in IMG/M
3300009792\|Ga0126374_11418075	Not Available	566	Open in IMG/M
3300010046\|Ga0126384_11170526	Not Available	708	Open in IMG/M
3300010048\|Ga0126373_10037978	Not Available	4210	Open in IMG/M
3300010048\|Ga0126373_10062675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3338	Open in IMG/M
3300010322\|Ga0134084_10246897	Not Available	643	Open in IMG/M
3300010359\|Ga0126376_10561674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1071	Open in IMG/M
3300010359\|Ga0126376_11939377	Not Available	629	Open in IMG/M
3300010360\|Ga0126372_12394218	Not Available	578	Open in IMG/M
3300010361\|Ga0126378_10321340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1654	Open in IMG/M
3300010361\|Ga0126378_10973623	Not Available	953	Open in IMG/M
3300010361\|Ga0126378_11480761	Not Available	769	Open in IMG/M
3300010361\|Ga0126378_12717617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300010361\|Ga0126378_12808742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300010376\|Ga0126381_100297230	Not Available	2209	Open in IMG/M
3300010376\|Ga0126381_103962163	Not Available	577	Open in IMG/M
3300010398\|Ga0126383_10452947	Not Available	1333	Open in IMG/M
3300010398\|Ga0126383_12990734	Not Available	552	Open in IMG/M
3300011120\|Ga0150983_13124536	Not Available	539	Open in IMG/M
3300012205\|Ga0137362_10387677	Not Available	1210	Open in IMG/M
3300012285\|Ga0137370_10235328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1082	Open in IMG/M
3300012356\|Ga0137371_10918886	Not Available	665	Open in IMG/M
3300012361\|Ga0137360_10127312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1989	Open in IMG/M
3300012361\|Ga0137360_11062732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300012685\|Ga0137397_10904118	Not Available	654	Open in IMG/M
3300012924\|Ga0137413_11423567	Not Available	561	Open in IMG/M
3300012971\|Ga0126369_11040376	Not Available	907	Open in IMG/M
3300012971\|Ga0126369_12642798	Not Available	586	Open in IMG/M
3300012977\|Ga0134087_10574664	Not Available	579	Open in IMG/M
3300015264\|Ga0137403_11153832	Not Available	621	Open in IMG/M
3300016357\|Ga0182032_10351702	Not Available	1179	Open in IMG/M
3300016371\|Ga0182034_10195406	Not Available	1560	Open in IMG/M
3300016422\|Ga0182039_10404769	Not Available	1159	Open in IMG/M
3300018433\|Ga0066667_11394205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300020579\|Ga0210407_10597248	Not Available	860	Open in IMG/M
3300020580\|Ga0210403_10601828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	887	Open in IMG/M
3300020580\|Ga0210403_11260645	Not Available	566	Open in IMG/M
3300020581\|Ga0210399_10842789	Not Available	747	Open in IMG/M
3300020582\|Ga0210395_10170689	Not Available	1628	Open in IMG/M
3300020583\|Ga0210401_10277949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1534	Open in IMG/M
3300020583\|Ga0210401_10447684	Not Available	1154	Open in IMG/M
3300021168\|Ga0210406_10517487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300021171\|Ga0210405_11415289	Not Available	506	Open in IMG/M
3300021178\|Ga0210408_11159151	Not Available	592	Open in IMG/M
3300021181\|Ga0210388_10609271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	955	Open in IMG/M
3300021403\|Ga0210397_10465375	Not Available	953	Open in IMG/M
3300021420\|Ga0210394_10675921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	906	Open in IMG/M
3300021478\|Ga0210402_11415450	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300021560\|Ga0126371_10043568	Not Available	4266	Open in IMG/M
3300021560\|Ga0126371_10151836	Not Available	2378	Open in IMG/M
3300021560\|Ga0126371_11902645	Not Available	714	Open in IMG/M
3300021560\|Ga0126371_11993632	Not Available	698	Open in IMG/M
3300021560\|Ga0126371_13313256	Not Available	544	Open in IMG/M
3300022724\|Ga0242665_10086587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	906	Open in IMG/M
3300025915\|Ga0207693_10563996	Not Available	887	Open in IMG/M
3300025916\|Ga0207663_10315608	Not Available	1173	Open in IMG/M
3300025928\|Ga0207700_11017739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	741	Open in IMG/M
3300025929\|Ga0207664_10845634	All Organisms → cellular organisms → Bacteria → Proteobacteria	822	Open in IMG/M
3300026551\|Ga0209648_10209144	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1481	Open in IMG/M
3300026984\|Ga0208732_1004770	Not Available	1043	Open in IMG/M
3300027297\|Ga0208241_1009230	All Organisms → cellular organisms → Bacteria → Proteobacteria	1363	Open in IMG/M
3300027371\|Ga0209418_1054272	Not Available	713	Open in IMG/M
3300027635\|Ga0209625_1038207	Not Available	1071	Open in IMG/M
3300027795\|Ga0209139_10311756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300027855\|Ga0209693_10122429	Not Available	1287	Open in IMG/M
3300027884\|Ga0209275_10025306	Not Available	2693	Open in IMG/M
3300027889\|Ga0209380_10603765	Not Available	635	Open in IMG/M
3300028047\|Ga0209526_10463403	All Organisms → cellular organisms → Bacteria → Proteobacteria	832	Open in IMG/M
3300028906\|Ga0308309_10240460	Not Available	1510	Open in IMG/M
3300031057\|Ga0170834_103071927	Not Available	546	Open in IMG/M
3300031057\|Ga0170834_111294494	Not Available	692	Open in IMG/M
3300031128\|Ga0170823_10238129	Not Available	528	Open in IMG/M
3300031128\|Ga0170823_12054790	Not Available	521	Open in IMG/M
3300031231\|Ga0170824_107354241	Not Available	686	Open in IMG/M
3300031231\|Ga0170824_109699560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	919	Open in IMG/M
3300031231\|Ga0170824_114982532	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300031231\|Ga0170824_123058569	Not Available	537	Open in IMG/M
3300031754\|Ga0307475_10233981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_4_65_11	1471	Open in IMG/M
3300031754\|Ga0307475_10887548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300031954\|Ga0306926_10834671	Not Available	1108	Open in IMG/M
3300031954\|Ga0306926_12963475	Not Available	508	Open in IMG/M
3300032059\|Ga0318533_10110459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1913	Open in IMG/M
3300032205\|Ga0307472_102627114	Not Available	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.52%
Aquatic	Environmental → Aquatic	2.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.69%
Freshwater	Environmental → Aquatic → Freshwater	2.48%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.77%
Loam	Environmental → Terrestrial → Soil → Loam	28.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.48%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.48%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.22%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.13%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320005	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2-	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORA_4315200	2032320005	Soil	MHFGSDGHWNRKSAAYHHAEAARARRLLAEATTHWSKGHLADVIAWHEQIAAEIERASEPDADEASPQHAAAAASSETPG
JGI1027J12803_1084359544	3300000955	Soil	MEPTSAGYHRAAAARARRLRAEATTQWLKTHLDEAIARHEKIAEEIERASEPDGDAGSRRERTFALSIETLDRGEPADAA
JGIcombinedJ26739_1017780491	3300002245	Forest Soil	WSMEQRSATYHRAVAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
JGIcombinedJ51221_102998601	3300003505	Forest Soil	ARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0062389_1009179153	3300004092	Bog Forest Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHKQIAAEIERASEPDGDAVSSQDETSALSSE
Ga0062386_1017169651	3300004152	Bog Forest Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENEIAQHEQIAEEIERVSEPGADAASAQGETTALSSETPGR*
Ga0066395_100894823	3300004633	Tropical Forest Soil	MAVADFGNAVGVAVLERRSAAYHRAAAARARRLRAEATTAWSKEYLTDAVVRHEQIATEIERTSEPDAPATPQENETAAPSSETPGQ*
Ga0066395_101519113	3300004633	Tropical Forest Soil	MQSAEYHRAAAARVRKLRADATTRWLKEHLEDEIVRHEQIAEEIERVSEPDADASPVSETAALSSETAGR*
Ga0066683_106365292	3300005172	Soil	VERRSAAYHRAAAARARRLRAEATTPWLKKHLESEIAQREQIAAEVERASEFDGDAASAQAETAAFSSETPGDKPQGFA*
Ga0066685_104200982	3300005180	Soil	LEQRSAAYHRAAAARARRLRAEATTRWSKEHLEEEIARHEQIADEIERASEPDADATSAQDETAALASETPGR*
Ga0070709_100498784	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRLEWWSLEHRSSAYHRAAAERARRLRAEATTRWLKEQLEDAIAQHEKIAAAIERASEPGADGASAQTETAALSSETPGQ*
Ga0070714_1004527462	3300005435	Agricultural Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENDIAQHEQIAAEIERASEPDGDAASAEDQTPALSSETPGR*
Ga0070713_1004088541	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VFLGNDTSEWWSLEQRSAVYHRAAAAKARRFRAEATTPRLKEQLENAIAQHEQIAAEIKRASEPDGDAVSSQDETSAHSSETPAE*
Ga0070713_1020795371	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AVYHRAAAAKARRLREEATTRRLKEQLENAIVQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0070710_113434851	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ARARRLRAEATTPWLKEHLENEIAQHEQIVAEIERASEPGADAASAQGETATETPGR*
Ga0070711_1003096342	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSS*
Ga0066701_102211743	3300005552	Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENLIAQHEQIAAEIERASEPDRDAATAEDQTAALSSETPGR*
Ga0066699_101277841	3300005561	Soil	MEQRSAAYHRAAAARARKLREEATTPWLKEHLENTITQHEQIAAEIERASEPDRDAAASAEGETAALSDETPGR*
Ga0070762_101581642	3300005602	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETAALSSETPGR*
Ga0066903_1001538144	3300005764	Tropical Forest Soil	MEQRSAAAYHRAAAARARRLLSEATTCWLKEHLAAAIARHDQLVEEIERVSDPNAEEGETPALSSETPGR*
Ga0066903_1021869623	3300005764	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSEPDADASPVSETAALSSETPGR*
Ga0066903_1048432233	3300005764	Tropical Forest Soil	MAVADFGNAVEVEVLERRSAAYHRAAAARARRLRAEATTPWSKEYLAEAVARHEQIAAEIERTSEPDAVTTSQENETAALSSETPGQ*
Ga0070766_103233251	3300005921	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0070717_102422253	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MEQRSAAYHRVAAARARRLREEATTRRLKEQLEAAIAQHEQIAESIERAVEPGADAASAQGETAALSSETPGQ*
Ga0070712_1002824232	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAEHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0070712_1002957981	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VFLGNDTSEWWSLEQRSAVYHRAAAAKARRFRAEATTPRLKEQLENAIAQHEQIAAEIKRASEPDGDAVSSQDETSALSSETPGR*
Ga0070712_1017635661	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LEHRSAAFHRAAAARARRLRAEATTRWLKEQLEDTIAQHEKIAAAIEMASEPGADAGSEGKTAPLAS*
Ga0070765_1002337143	3300006176	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETPGR*
Ga0070765_1003722492	3300006176	Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0079222_100716063	3300006755	Agricultural Soil	MEQRSAAYHRAAAARARSLRAEATTPWSKGHLGNAIDEHEQIAEEIERASEPDGDAVSSQDETPAPSSETPGR*
Ga0079222_102299551	3300006755	Agricultural Soil	LEQKSAAYHHAEAARARRLLAEATTHWSKGHLADVIAWHEQIAAEIERASEPDADEASPQHAAAAASSETPG*
Ga0066665_116209062	3300006796	Soil	VERRSAAYHRAAAARARRLRAEATTPWLKKHLESEIAQREQIAAEVERASEFDGDAASAQAETAAFSSETPGDKP
Ga0066660_111466122	3300006800	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLKNAIAQHEQIAAEIERASEPDEDAVSSQDETSALSSETPGR*
Ga0066660_114115091	3300006800	Soil	LERRSAAYHRAAAVRARRLRAEATTLWLKKHLENEIAEHEQIAAEIERASEPGADAASGRAETAALSTEPPSR*
Ga0079221_116668431	3300006804	Agricultural Soil	MEQRSAAYHRAAAARARRLRAEATTPWSKGHLGNAIDEHEQIAEEIERASEPDGDAVSSQDETPAPSSETPGR*
Ga0126374_114180751	3300009792	Tropical Forest Soil	MQSAEYHRAAAARARKLRADATTRWLKHHLEDEIALHEQIAEEIERASGLDADAGLPEGETPALASETPGR*
Ga0126384_111705261	3300010046	Tropical Forest Soil	QRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSDPDADTVLPEGETPALSSETPGR*
Ga0126373_100379783	3300010048	Tropical Forest Soil	LGTQSAEYHRAAAARARKLRADATTRWLKERLEDEIAQHEQLAEEIERATKADADPATAEADAPVLSSETPGR*
Ga0126373_100626755	3300010048	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSDPDADTGLPEGETPALSSETPGR*
Ga0134084_102468971	3300010322	Grasslands Soil	LEQRSAAYHRAAAARARRLRAEATTRWSKEHLEEEIARHEQIADEIERASEPDADAASAQDETAALASETPGR*
Ga0126370_113472101	3300010358	Tropical Forest Soil	LEHPSAAYHRAAAARARRLRAEATTHRLKQHLEDEIAWHEQKADEIERAYEAGTDAEYPRADTSV*
Ga0126376_105616741	3300010359	Tropical Forest Soil	PSMAVADFGNVVEVEVLERRSAAYHRAAAARARRLRAEATTAWSKEYLGEAVARHEQIAAEVERTSEPDAAITSQENETAALSSETPGQ*
Ga0126376_119393772	3300010359	Tropical Forest Soil	MQSAEYHRAAAARVRKLRADATTRWLKEHLEDEIVRHEQIAEEIERVSDLAADAGLPQGETPALSSETPGR*
Ga0126372_123942181	3300010360	Tropical Forest Soil	ATYHRAEAARARKLLAEATTPRLKEHLEAEVARHEQIAAEVERASEPDAVSSHDASADLSSEASDDG*
Ga0126372_125370831	3300010360	Tropical Forest Soil	ARRLRAEATTAWSKEYLTEAVAQHEQIAAEIERTSEPDAPAMSEENETAASSSETPEQ*
Ga0126378_103213402	3300010361	Tropical Forest Soil	MAVADFGNAVEVEVLERRSAAYHRAAAARARRLRAEATTPWSKEYLAEAVARHEQIAAEIERTSEPDAATTLQENETVALSSETPGQ*
Ga0126378_109736231	3300010361	Tropical Forest Soil	AAARVRKLRADATTRWLKEHLEDEIVRHEQIAEEIERVSDPDADAGLAEGETPALSSETPGR*
Ga0126378_114807612	3300010361	Tropical Forest Soil	AAYHRAEAARARRLRAEATTRWLKEHLDDAIARHEQIAAEVERASEPDRASPLDKFAELSSETPGG*
Ga0126378_127176171	3300010361	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSDPDADTVLPDGETPALSSETPGR*
Ga0126378_128087421	3300010361	Tropical Forest Soil	AAARARRLRAEATTAWSKEYLAEAVARHEQIAAEVERASEPDADTVALSSETPG*
Ga0126379_104357411	3300010366	Tropical Forest Soil	MQSAEYHRAAAARVRKLRADATTRWLKEHLEDEIVRHEQIAEEIERVSDLAADAGLPQGETP
Ga0126381_1002972301	3300010376	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIERVSDPDADTVLPEGETPALSSETPGR*
Ga0126381_1039621632	3300010376	Tropical Forest Soil	LERRSAAYHRAKAAQARRLLADATTRWLKEHLRDDIARHEQIAAEVERASEPDMDAASPQHATAAVSSETPG*
Ga0126383_104529472	3300010398	Tropical Forest Soil	MQSAEYHRAAAARARKLRADATTRWLKQHLEDEIALHEQIAEEIERASEPDADAGLPEGETPALASETPGR*
Ga0126383_129907341	3300010398	Tropical Forest Soil	RRVFPIVRMRPEWWLLERRSSAYHRAAAARARRLRAEATTRWLKEHLADAIAQHEQIAAEIERVSEPDVDAASPEEEPAVLSSETPGR*
Ga0150983_131245362	3300011120	Forest Soil	MEQRSADYHRAAAARARRLRAEATTLWLKEHLEDAIAQHEQIATEIERASEPDGDAASSQDEISALSSETPGR*
Ga0137362_103876771	3300012205	Vadose Zone Soil	MEQRSAAYHRAAAARARRLRAEAPTRWLKEHLEDAIARHDQIAEEIERASEPDADAASPQDETTALSSETPGR*
Ga0137370_102353282	3300012285	Vadose Zone Soil	MEQRSVAYHRTAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPNGDAVSSQDETSALSSETPGR*
Ga0137371_109188861	3300012356	Vadose Zone Soil	GRRPQSGANLNGTFGVVVMEQSSSAAYHRAAAARARRLRAEATTRWSKEHLEEEIARHEQIADEIERASEPDADAASAQDETAALASETPGR*
Ga0137360_101273121	3300012361	Vadose Zone Soil	LELKSAAYHREALARARRLRAEATTPWLKEHLENLIAQHEQIAAEIERASEPDRDAATAEDQTAALSSETPGR*
Ga0137360_110627322	3300012361	Vadose Zone Soil	LEQKSAAYHRAAAARARRLRAEATTRWLKEHLEGEIAQREQIAAEVERAFEPDRDAASGQTETAALSSETPGR*
Ga0137397_109041181	3300012685	Vadose Zone Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENLIAQHEQIAEEIERAAEPGADAASAEDQTAALSSETPGR*
Ga0137413_114235671	3300012924	Vadose Zone Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENDIAQHEQIAEEIERASEPDGDAVSSQDETSALSSETPGR*
Ga0126369_110403761	3300012971	Tropical Forest Soil	AARARKLRADATTRWLKERLEDEIAQHEQLAEEIERATKADADPATAEADAPVLSSETPGR*
Ga0126369_126427982	3300012971	Tropical Forest Soil	LEQRAAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIDRVSDPDAEEGETLALASETPGR*
Ga0134087_105746642	3300012977	Grasslands Soil	AAARARRLRAEATTPWVKDRLEVEIVQHEQIAAEIEKASEPRTDGASPEGESAAVSSETPGR*
Ga0137403_111538321	3300015264	Vadose Zone Soil	MEHNSAAYHRAAAARARRLRAEATTRWLKEQLEATIAQHEQIAAEIERACEPDTERASSEDEVTALSSETPRC*
Ga0182032_103517022	3300016357	Soil	MFGVAILERKSATYHRAAAARARRLRAEATTRWLKEHLEDTITRHEQIVAQVERVSERDAVSPHDASAELSSETPE
Ga0182034_101954062	3300016371	Soil	MFGVAILERKSATYHRAAAARARRLRAAATTRWSKEHLEDTIARPEQIAAQVERVSEPDAVSPHDASAELSSETPE
Ga0182039_104047693	3300016422	Soil	VAILERKSATYHRAAAARARRLRAEATTRWLKEHLEDTITRHEQIVAQVERVSERDAVSPHDASAE
Ga0066667_113942052	3300018433	Grasslands Soil	MEQRSAAYHRAAAAQARRLRAEATTRWLKEHLENAIAKHEQIAAEIERASEPGGDAVPPQDETSALSSETPG
Ga0210407_105972482	3300020579	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAEHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210403_106018281	3300020580	Soil	MEQRSADYHRAAAARARRFRAEATTPWLKEHLENAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETPGR
Ga0210403_112606451	3300020580	Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210399_108427891	3300020581	Soil	LEHRSAAFHRAAAARARRLRAEATTRWLKEQLEDTIAQHEKIAAAIEMASEPGADEGSEGETAPLQAKPPADNPQGFA
Ga0210395_101706892	3300020582	Soil	MEQRSATYHRAAAARARRLRAEATTLWLKEHLEHAIAQHEQIATEIERASEPDGDAASSQDETSALSSETPGR
Ga0210401_102779491	3300020583	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210401_104476841	3300020583	Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENDIAQHEQIAAEIERASEPDGDAASAEDQTPALSSETPGR
Ga0210406_105174871	3300021168	Soil	MEQRSAAYHRAAAARARRLWAEATTPWLKEHLENATAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210405_114152891	3300021171	Soil	MEQRSAAYHRAGAARARRLGAEATTPWLKEHLENAIAQHEEIAAEIERASEPDGDAVSSQDETSALSSETPRRQSEGSTRSPFGTTERSGL
Ga0210408_111591511	3300021178	Soil	MEQTSSAAYHRAAAARARRLRAEATTRWLKEHLEGAIARHEQIAEQIERGFEPDADAALPETEETAGR
Ga0210388_106092711	3300021181	Soil	MEQRSADYHRAAAARARRLRAEATTLWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210397_104653752	3300021403	Soil	RSATYHRAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0210394_106759211	3300021420	Soil	RSAAFHRAAAARARRLRAEATTRWLKEQLEDTIAQHEKIAAAIEMASEPGADEGSEGETAPLQAKPPADNPQGFA
Ga0210402_114154501	3300021478	Soil	HRAAAARARRLRAEATTPWLKEHLENVIAQHEQIAAEIERASEPDGDAVSSQDETSALSPGR
Ga0126371_100435687	3300021560	Tropical Forest Soil	LGTQSAEYHRAAAARARKLRADATTRWLKERLEDEIAQHEQLAEEIERATKADADPATAEADAPVLSSETPGR
Ga0126371_101518363	3300021560	Tropical Forest Soil	LEWWSLSTQSAEYHRAAAARARKLRADATTRWLKEHLEDEIARHERIAEEIERASEPDADAGLPEGETPALASETPGR
Ga0126371_119026451	3300021560	Tropical Forest Soil	AAAYHRAAAARARKLRAEATTRWLKEHLEEAIARHEQIAEEIDRVSDPDAEEGETLALASETPGR
Ga0126371_119936322	3300021560	Tropical Forest Soil	MAVADFGNAVEVEVLERRSAAYHRAAAARARRLRAEATTPWSKEYLAEAVARHEQIAAEIERTSEPDAATTLEENETAALSSETPGQ
Ga0126371_133132561	3300021560	Tropical Forest Soil	SAAYHRAAAARARRLRAEATTAWSKEYLTEAVAQHEQIAAEIERTSEPDAPAMSEENETAASSSETPEQ
Ga0213880_100453802	3300021953	Exposed Rock	VEKSSATYHRAVAARARRLREEATTRRLKEQLAETIAQHEQIAEEIERAFEFAADVASPQGDIAAD
Ga0242665_100865873	3300022724	Soil	MEQRSEDYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0207693_105639961	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	FLGNDTSEWWSLEQRSAVYHREAAAKARRLREEATTRRLKEQLENAIVQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0207663_103156082	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MEERSAVYHRAAAARARRLREEATTRRLKEQLEDAIAQHEKIAAAIERAAEPGADAASAQ
Ga0207700_110177392	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VFLGNDTSEWWSLEQRSAVYHRAAAAKARRFRAEATTPRLKEQLENAIAQHEQIAAEIKRASEPDGDAVSSQDETSAHSSETPAE
Ga0207664_108456341	3300025929	Agricultural Soil	REAAARARRLRAEATTPWLKEHLENDIAQHEQIAAEIERASEPDGDAVSAEDQTPALSSETPGR
Ga0209648_102091442	3300026551	Grasslands Soil	MEQRSAAYHRAAAARGRRLRAEATTPWLKEHLENLIAQHEQIAAEIERAAEPGADAASAQGEAALSSETPGR
Ga0208732_10047702	3300026984	Forest Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGEAVSSQDETSALSSETPGR
Ga0208241_10092301	3300027297	Forest Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIKRASEPDGDAVSSQDETSALSSETPGR
Ga0209418_10542722	3300027371	Forest Soil	SLEEKAAAYHRAAAARARRLRAEATTRWLKEHLEDAIARHEQIAEEIERASEADADAGSTQDEAAPLSSETPGR
Ga0209625_10382071	3300027635	Forest Soil	MEQRSATYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0209139_103117561	3300027795	Bog Forest Soil	VAKARRLREEATTRRLKEQLEDVIARHEQIAEEIERAFEPDGDAVSSQDETSALSSETPG
Ga0209693_101224291	3300027855	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETCDGPVVWTGSGEE
Ga0209275_100253062	3300027884	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETAALSSETPGR
Ga0209380_106037653	3300027889	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETS
Ga0209526_104634031	3300028047	Forest Soil	MERRSAAYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR
Ga0308309_102404603	3300028906	Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLESAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETPGR
Ga0170834_1030719271	3300031057	Forest Soil	LELKSATYHREAAARARRLRTEATTPRLKEQLEDAITQHEQIAEEIERAAEPGADAASVEDQTAALSSETPGR
Ga0170834_1112944942	3300031057	Forest Soil	MEQRSAAYHRAAAARARRLRAEATTPWLKEHLENEIAQHEQIAAEIEGASEPGADAASAQDETASETPGR
Ga0170823_102381291	3300031128	Forest Soil	MEQRSAAYHRAAAARARGLRAEATTPRLKEHLENAITQHEQIAAEIERASEPDGDAVSSQGETSALSSETPGR
Ga0170823_120547901	3300031128	Forest Soil	LELKSAAYHREAAARARRLRTEATTPRLKEQLEDAITQHEQIAEEIERAAEPGADAASAQGETPALSSETPGR
Ga0170824_1073542411	3300031231	Forest Soil	LELKSATYHREAAARARRLRTEATTPRLKEQLEDAITQHEQIAEEIERAAEPGADAASAQGETPALSSETPGR
Ga0170824_1096995601	3300031231	Forest Soil	LELKSAAYHREAAARARRLRAEATTPWLKEHLENEIAQHEQIAAEIEGASEPGADAASAQDETASETPGR
Ga0170824_1149825321	3300031231	Forest Soil	MERRSAGYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIERASEPDGDAVSSQGETSALSSETPGR
Ga0170824_1230585693	3300031231	Forest Soil	VFLVNDTSEWWSLELRSAVYHRTAAAKARRLREDATTRRLKEQLEDVIARHEQIAEEIERASEPNGDAVSSQDE
Ga0307475_102339812	3300031754	Hardwood Forest Soil	ARARRLRAEATTPWLKGHLENAIDEHEQIAEEIERASELDGDAVSSQDETSTLSSETPGR
Ga0307475_108875481	3300031754	Hardwood Forest Soil	MEQRSADYHRAAAARARRLRAEATTPWLKEHLENAIAQHEQIAAEIKRASEPDGEAVSSQDETSALSSETCDGPGSLDSFRGGIS
Ga0306926_108346711	3300031954	Soil	MFGVAILERKSATYHRAAAARARRLRAAATTRWSKEHLEDTIARPEQIAAQVERVSEPDAVSPHDAS
Ga0306926_129634752	3300031954	Soil	LERRSADYYRAEAARARRLLAEATTPWLKEHLANSIARHEQIATEIERASEPDTASPHDQSAEVSRVTSVASHRVT
Ga0318533_101104591	3300032059	Soil	AILERKSATYHRAAAARARRLRAEATTRWLKEHLEDTITRHEQIVAQVERVSERDAVSPHDASAELSSETPE
Ga0307472_1026271142	3300032205	Hardwood Forest Soil	DYHRAAAARARRLRAEATTPWLKEHLENAIAEHEQIAAEIERASEPDGDAVSSQDETSALSSETPGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072608

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences