Scaffold Ga0126371_10032941

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10032941
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4865
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016434	Metagenome / Metatranscriptome	247	Y
F054231	Metagenome	140	Y
F064306	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_100329412	F054231	AGGCGG	VLNNLSEQIRECLQHAEECAQKAAELPNGSHFRQDFLQLEKRWLELARSIEFGESLDRFTKNIPKPNIKPNGHAI
Ga0126371_100329414	F064306	N/A	MRKVLEYEQQAAECRQKAAQMKNPQQKKQLEDMADVWDRLARERRHGIVENNPDQT
Ga0126371_100329416	F016434	AGGAG	MRTVFAIITVTLLAIGPAAAGSAKSFAPGHHHTNGVHGVSSHAPGHVKKGLQMRSARGVSPGQMKY