Metagenome Family F054231

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F054231
Family Type	Metagenome
Number of Sequences	140
Average Sequence Length	71 residues
Representative Sequence	VLNNLSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGFTKNSAEPNLPNL
Number of Associated Samples	70
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.98 %
% of genes near scaffold ends (potentially truncated)	28.57 %
% of genes from short scaffolds (< 2000 bps)	69.29 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (75.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (32.857 % of family members)
Environment Ontology (ENVO)	Unclassified (57.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (78.571 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.58% β-sheet: 0.00% Coil/Unstructured: 42.42%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF04392	ABC_sub_bind	6.43
PF00440	TetR_N	1.43
PF13545	HTH_Crp_2	1.43
PF01322	Cytochrom_C_2	1.43
PF13396	PLDc_N	1.43
PF01471	PG_binding_1	1.43
PF00589	Phage_integrase	1.43
PF06823	DUF1236	1.43
PF06026	Rib_5-P_isom_A	0.71
PF01928	CYTH	0.71
PF07690	MFS_1	0.71
PF03330	DPBB_1	0.71
PF07883	Cupin_2	0.71
PF04226	Transgly_assoc	0.71
PF02705	K_trans	0.71
PF10027	DUF2269	0.71
PF11752	DUF3309	0.71
PF02582	DUF155	0.71
PF00196	GerE	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.43
COG3909	Cytochrome c556	Energy production and conversion [C]	1.43
COG0120	Ribose 5-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.71
COG1723	Mitochondrial translation protein, Rmd1/RMND1/DUF155 family	Translation, ribosomal structure and biogenesis [J]	0.71
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.71
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
All Organisms	root	All Organisms	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
cellular organisms	root	All Organisms → cellular organisms	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.86 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.43 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.71 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.71 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.43 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.71 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.71 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.43 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.71 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	0.71 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.43 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	0.71 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	0.71 %
Bradyrhizobium sp. Rc2d	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	0.71 %
Mesorhizobium plurifarium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	0.71 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.71 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10000148	Not Available	12857	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10085690	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300004633\|Ga0066395_10001621	All Organisms → cellular organisms → Bacteria → Proteobacteria	7836	Open in IMG/M
3300004633\|Ga0066395_10005453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4454	Open in IMG/M
3300005332\|Ga0066388_100266867	All Organisms → cellular organisms → Bacteria → Proteobacteria	2353	Open in IMG/M
3300005332\|Ga0066388_100392138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2034	Open in IMG/M
3300005332\|Ga0066388_100521571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1821	Open in IMG/M
3300005332\|Ga0066388_101281089	Not Available	1261	Open in IMG/M
3300005332\|Ga0066388_101775623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1095	Open in IMG/M
3300005332\|Ga0066388_106240922	Not Available	601	Open in IMG/M
3300005713\|Ga0066905_101340171	Not Available	645	Open in IMG/M
3300005713\|Ga0066905_102194294	Not Available	515	Open in IMG/M
3300005764\|Ga0066903_100922986	Not Available	1583	Open in IMG/M
3300005764\|Ga0066903_100937871	Not Available	1572	Open in IMG/M
3300005764\|Ga0066903_103158765	Not Available	891	Open in IMG/M
3300005764\|Ga0066903_105104852	Not Available	695	Open in IMG/M
3300005764\|Ga0066903_105754651	Not Available	651	Open in IMG/M
3300005764\|Ga0066903_105834581	Not Available	646	Open in IMG/M
3300005764\|Ga0066903_107676694	Not Available	555	Open in IMG/M
3300005764\|Ga0066903_107814480	Not Available	550	Open in IMG/M
3300006059\|Ga0075017_101005026	Not Available	650	Open in IMG/M
3300006175\|Ga0070712_100227157	Not Available	1481	Open in IMG/M
3300009792\|Ga0126374_10248576	Not Available	1159	Open in IMG/M
3300010046\|Ga0126384_10220989	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300010046\|Ga0126384_11851415	Not Available	574	Open in IMG/M
3300010046\|Ga0126384_11980708	Not Available	557	Open in IMG/M
3300010046\|Ga0126384_12400838	Not Available	510	Open in IMG/M
3300010048\|Ga0126373_11762254	Not Available	683	Open in IMG/M
3300010048\|Ga0126373_12164879	Not Available	618	Open in IMG/M
3300010048\|Ga0126373_12177752	Not Available	616	Open in IMG/M
3300010048\|Ga0126373_13260607	Not Available	505	Open in IMG/M
3300010358\|Ga0126370_10016058	All Organisms → cellular organisms → Bacteria → Proteobacteria	4180	Open in IMG/M
3300010358\|Ga0126370_10930477	Not Available	787	Open in IMG/M
3300010359\|Ga0126376_12568297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	558	Open in IMG/M
3300010360\|Ga0126372_11104793	Not Available	812	Open in IMG/M
3300010361\|Ga0126378_10083934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	3094	Open in IMG/M
3300010361\|Ga0126378_10361507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1562	Open in IMG/M
3300010361\|Ga0126378_10904909	Not Available	989	Open in IMG/M
3300010361\|Ga0126378_11991832	Not Available	662	Open in IMG/M
3300010366\|Ga0126379_10248599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1750	Open in IMG/M
3300010376\|Ga0126381_100132715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3243	Open in IMG/M
3300010376\|Ga0126381_100675030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	1476	Open in IMG/M
3300010376\|Ga0126381_100678335	Not Available	1472	Open in IMG/M
3300010376\|Ga0126381_100770339	Not Available	1380	Open in IMG/M
3300010376\|Ga0126381_103466310	Not Available	620	Open in IMG/M
3300010376\|Ga0126381_104059159	Not Available	569	Open in IMG/M
3300010398\|Ga0126383_10091275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2692	Open in IMG/M
3300010398\|Ga0126383_10658781	Not Available	1123	Open in IMG/M
3300010398\|Ga0126383_10797717	Not Available	1027	Open in IMG/M
3300010398\|Ga0126383_13598978	Not Available	506	Open in IMG/M
3300012971\|Ga0126369_10059978	All Organisms → cellular organisms → Bacteria → Proteobacteria	3291	Open in IMG/M
3300016294\|Ga0182041_10835757	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300016294\|Ga0182041_11286936	Not Available	669	Open in IMG/M
3300016319\|Ga0182033_11116559	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300016371\|Ga0182034_10005669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6650	Open in IMG/M
3300016371\|Ga0182034_10237974	Not Available	1429	Open in IMG/M
3300016371\|Ga0182034_11083435	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300016371\|Ga0182034_11590719	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300016387\|Ga0182040_11620643	Not Available	551	Open in IMG/M
3300016404\|Ga0182037_10691059	Not Available	873	Open in IMG/M
3300016404\|Ga0182037_12111906	Not Available	507	Open in IMG/M
3300016422\|Ga0182039_11572046	Not Available	600	Open in IMG/M
3300021168\|Ga0210406_10467148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1002	Open in IMG/M
3300021560\|Ga0126371_10015455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6978	Open in IMG/M
3300021560\|Ga0126371_10032941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4865	Open in IMG/M
3300021560\|Ga0126371_10456700	Not Available	1424	Open in IMG/M
3300021560\|Ga0126371_10538887	Not Available	1316	Open in IMG/M
3300021560\|Ga0126371_10557804	All Organisms → cellular organisms → Bacteria → Proteobacteria	1294	Open in IMG/M
3300021560\|Ga0126371_10683117	Not Available	1175	Open in IMG/M
3300021560\|Ga0126371_10698511	Not Available	1162	Open in IMG/M
3300021560\|Ga0126371_13820171	Not Available	508	Open in IMG/M
3300026871\|Ga0207825_107704	Not Available	791	Open in IMG/M
3300027003\|Ga0207722_1019186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium plurifarium	758	Open in IMG/M
3300027039\|Ga0207855_1017621	Not Available	982	Open in IMG/M
3300027070\|Ga0208365_1009119	Not Available	1216	Open in IMG/M
3300027680\|Ga0207826_1187908	Not Available	559	Open in IMG/M
3300027703\|Ga0207862_1048737	Not Available	1276	Open in IMG/M
3300031573\|Ga0310915_10539188	Not Available	828	Open in IMG/M
3300031640\|Ga0318555_10826843	Not Available	500	Open in IMG/M
3300031679\|Ga0318561_10442073	Not Available	715	Open in IMG/M
3300031680\|Ga0318574_10476956	Not Available	730	Open in IMG/M
3300031723\|Ga0318493_10323587	Not Available	835	Open in IMG/M
3300031744\|Ga0306918_10305756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1226	Open in IMG/M
3300031744\|Ga0306918_10798464	Not Available	737	Open in IMG/M
3300031744\|Ga0306918_11239477	Not Available	575	Open in IMG/M
3300031747\|Ga0318502_10268233	Not Available	999	Open in IMG/M
3300031753\|Ga0307477_10071720	Not Available	2394	Open in IMG/M
3300031764\|Ga0318535_10472626	Not Available	558	Open in IMG/M
3300031768\|Ga0318509_10323777	Not Available	863	Open in IMG/M
3300031768\|Ga0318509_10600485	Not Available	613	Open in IMG/M
3300031782\|Ga0318552_10393641	Not Available	706	Open in IMG/M
3300031793\|Ga0318548_10197358	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300031798\|Ga0318523_10378201	Not Available	704	Open in IMG/M
3300031833\|Ga0310917_10883434	Not Available	602	Open in IMG/M
3300031890\|Ga0306925_10620835	Not Available	1139	Open in IMG/M
3300031897\|Ga0318520_10584683	Not Available	693	Open in IMG/M
3300031910\|Ga0306923_10372558	Not Available	1627	Open in IMG/M
3300031910\|Ga0306923_11911867	Not Available	605	Open in IMG/M
3300031910\|Ga0306923_12390850	Not Available	524	Open in IMG/M
3300031912\|Ga0306921_10493171	Not Available	1425	Open in IMG/M
3300031912\|Ga0306921_11236070	Not Available	830	Open in IMG/M
3300031942\|Ga0310916_10226227	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300031942\|Ga0310916_11501744	Not Available	549	Open in IMG/M
3300031945\|Ga0310913_10438356	Not Available	927	Open in IMG/M
3300031954\|Ga0306926_12051180	Not Available	641	Open in IMG/M
3300031981\|Ga0318531_10183206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	942	Open in IMG/M
3300032001\|Ga0306922_10862934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	942	Open in IMG/M
3300032043\|Ga0318556_10245886	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300032076\|Ga0306924_11419794	Not Available	740	Open in IMG/M
3300032261\|Ga0306920_100908079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1287	Open in IMG/M
3300032261\|Ga0306920_101071418	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.29%
Aquatic	Environmental → Aquatic	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.29%
Sediment	Environmental → Aquatic → Sediment	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.43%
Loam	Environmental → Terrestrial → Soil → Loam	22.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.71%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	32.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	20.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.43%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.71%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026871	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 78 (SPAdes)	Environmental	Open in IMG/M
3300026990	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100001482	3300000597	Forest Soil	MLNNLSEQIRECLQHAEXCARKAAELPNDSSXRQDFLRLEXRWLELARSIEFGESLDTFTKNIPKPNLSGPT*
AF_2010_repII_A1DRAFT_100856901	3300000597	Forest Soil	RPVEPHESGGRVVLNNLSEQIRECLQHAEDCARKAAELPNGSRFRQDFLQLEKRWLELARSIEFGESLDCFTKNSPKPNIKPNGRPI*
Ga0066395_100016215	3300004633	Tropical Forest Soil	VLNNLSEQIRECLQHAEECAQKAAELPNGSHFRQDFLQLEKRWLELARSIEFGESLDRFTKNIPKPNIKPNGHAI*
Ga0066395_100054535	3300004633	Tropical Forest Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPDL*
Ga0066388_1002668674	3300005332	Tropical Forest Soil	VLNNLSEQIRECLEHAEDCARKAASLPNVSPFRQDLLDLERRWLELARSIEFGERLDSFTKNAIKPNITPNV*
Ga0066388_1003921383	3300005332	Tropical Forest Soil	RECLQHAEECAQKAAELPNGSHFRQDFLQLEKRWLELARSIEFGESLDRFTKNIPKPNIKPNGHAI*
Ga0066388_1005215712	3300005332	Tropical Forest Soil	MLANLSDQIRDCLEHAEDCARKAAELPDGSPFRQDFLRLEKRWLELARSFEFGESLDSFTKSSAKPNIKPNL*
Ga0066388_1012810894	3300005332	Tropical Forest Soil	VGGLIVLNDLEQIRECLRHAEECAQKAAELPDDSRFRQDFIQLEQRWLEMARSIEFGEQLNTFSKNSSKPKIKPNV*
Ga0066388_1017756231	3300005332	Tropical Forest Soil	MLNNLSEQIRECLQHAEECAQKAAELPSSSPFRQDFVRLEKRWLELVRSFEFGEQLDGFTKSIPKPNQSHSSVN*
Ga0066388_1060802262	3300005332	Tropical Forest Soil	VLDKISEQIRECLEAAEHCAGKAATLPDSSPFKQDFLNLEQRWLELARSIEFGES
Ga0066388_1062409222	3300005332	Tropical Forest Soil	MLNNLSEQIRECLNHAEDCARKAATLPDSSPFRQDFLNLEQRWLELARSIEFGERLERFTKNRPKPTIKPPPPSGW*
Ga0066388_1074438701	3300005332	Tropical Forest Soil	VSAGVGVLLNGLSEQIRECLEHAEDCARKAAELPNGSRFRQDFLNLEQRWLELARSIEFGA*
Ga0066388_1077012943	3300005332	Tropical Forest Soil	VLNDLEQICECLRHAEECALKAAELPNGSRFRQDFIQLEQRWLEMARSIEFGE
Ga0066905_1013401713	3300005713	Tropical Forest Soil	MRQRDNLTQEIRECLRHAEECAREAAELPDGSVFRQDFLELQNRWLELARSIEFGEQLDSFTKKPR
Ga0066905_1021942941	3300005713	Tropical Forest Soil	MLNNLSEQIRECLQAAENCARKAAELPNSSPFHQDYLRLEKRWLELARSIEFGESLDTFAKNSAKLNIKPRV*
Ga0066903_1009229863	3300005764	Tropical Forest Soil	VLNNLSEQIRECLEHAEECARKAAELPNSSRFRQDFLQLKKRWLELARSIEFGESVDRFTKNSLKPNIKPSRN*
Ga0066903_1009378713	3300005764	Tropical Forest Soil	VLNNLSEQIRECLQHAEECARKAAELPNSSGFRKDFLQLEKRWLELARSIEFGERLDSFTKNSLKPNIKPNGNAI*
Ga0066903_1031587653	3300005764	Tropical Forest Soil	ALPPITAKGRTMLNNLSKQIRDCLQHAEDCARKAAAQSDAGLRDDFLRLEKRWLDLARSIEFGEQLASFTKSTHKRGKSRSFWI*
Ga0066903_1034819163	3300005764	Tropical Forest Soil	MRQRDDLTQEIRECLRHAEECAREAAELPDGSVFRQDFLELQNRWL
Ga0066903_1050664331	3300005764	Tropical Forest Soil	VLNNLSEQIRDCLLHAEECARKAAELPNSSRFRQDFLQLEKRWLELARSIEFGES
Ga0066903_1051048521	3300005764	Tropical Forest Soil	MLNGLSEQIRECLQHAEECARQAAELPDGSRFREDFLRLEERWLELARSIEFGESLDTFTKNISKPEPNLSGRT*
Ga0066903_1057546511	3300005764	Tropical Forest Soil	VLSNLSEQIRECLQHAEECARKAAELPNSSRFRQDFLQLEKRWLELARSIEFGESIDTFITNIPKPSVKPNGNGAW*
Ga0066903_1058345811	3300005764	Tropical Forest Soil	VVVLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGELLDSFTQNSAEPNHPNL*
Ga0066903_1076766941	3300005764	Tropical Forest Soil	TQEIRECLRHAEECAREAAELPDGSVFRQDFLELQNRWLELARSIEFGEQLDSFTKKPRRV*
Ga0066903_1078144801	3300005764	Tropical Forest Soil	MAARCSIRSGIVVLNNLSDQIRECLEAAENCARKASALPDTSPFKKDFLNLEQRWLELARSIEFGESLDSFTKN
Ga0075017_1010050262	3300006059	Watersheds	VLNNLSEQIRECLQHAEDCARKAADLPVGSTFRQDFLNLEQRWLDLARSIEFGEQLDSFTKSIPKRRQSRSSLI*
Ga0070712_1002271571	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	PVEPDAIEGRVVLDNVSKQIRECLEHAEECAQKAAELPNGSPFRQDFLQLEKRWLELARSIEFGEQLDSFTKNSPKPNIKPNVLR*
Ga0079222_121055343	3300006755	Agricultural Soil	VLNSLSEQIRECLKHAQDCAHKAAAYPDGSPLRTHFLEMEQRWLRLARSIEFGE
Ga0126374_102485763	3300009792	Tropical Forest Soil	VVVLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPDL*
Ga0126380_103568141	3300010043	Tropical Forest Soil	MRQRDNLTQEIRECLRHAEECARKAAELPNSSPFHQDYLRLEKRWLELARSIEFGES
Ga0126384_102209891	3300010046	Tropical Forest Soil	MRQRDNLTQEIRECLRHAEECAREAAELPDGSVFRQDFLELQNRWLELARSIEFGEQLDSFTKKPRRV*
Ga0126384_116518701	3300010046	Tropical Forest Soil	MLNNLSEEIRECYRHAEECARKAAELSNGSRFRQDFLQLEKRWLDLARSIEFGERLTDFSAETKRNADKL
Ga0126384_118514151	3300010046	Tropical Forest Soil	MLNNLSEQIRECLQAAENCARKAAELPNSSPFHQDYLRLEKRWLELARSIEFGESLDTFTKNSAKLNIKAR
Ga0126384_119807081	3300010046	Tropical Forest Soil	VEGLVVLNDLEQICECLRHAEECALKAAELPNGSRFRQDFIQLEPRWLEMARSIEFGERLDIFTKKWRQAEHQAECLAR*
Ga0126384_124008381	3300010046	Tropical Forest Soil	MLNNLSEQIRECLQHAEQCARKAAELPNDSSSRQDFLRLEKRWLELARSIEFGESLDTFTKNIPKPNLSGPT*
Ga0126373_117229912	3300010048	Tropical Forest Soil	MFTSRPVEPRLACKGRIVLSNLSEQIRECLEQADDCAGKAATLPDSSPFRQDFLNLEQRWLELARSIEFGERLDSFTRNASKPNFVRN*
Ga0126373_117622542	3300010048	Tropical Forest Soil	MGDRVVPNSLSEQIRECLRHAEDCARKAAELPNGSPFRQDFLQLEKRWLELARSIEFGESRDTLTKNISKPNIKPNV*
Ga0126373_121648792	3300010048	Tropical Forest Soil	MVDVICRGTCEDRIVLDNVSEQIRECLEAAENCACKAATLPDSSPFKQDFLNLEKRWLELARSIEFGESLDRFTKNSPKPNFNPNM*
Ga0126373_121777521	3300010048	Tropical Forest Soil	VLNNLSEQIRDCLQHAEDCARKAAAQTDPGLREDFLQLEKRWLELARSIEFGESVDTFIKNIPN
Ga0126373_132606071	3300010048	Tropical Forest Soil	MRRGRVVLNSLSEEIRECLEAAENCARKAAALSDSSPFRQDFLNLEQRWLELARSIEFGESIDRFTKNSAEPNIKPNV*
Ga0126370_100160584	3300010358	Tropical Forest Soil	VVVLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPNL*
Ga0126370_109304772	3300010358	Tropical Forest Soil	MLNNLSEQIRECLQHAEECVRKAAELPNSSPFCQDFVRLEKRWLELVRSFEFGEQLDGFT
Ga0126376_125682972	3300010359	Tropical Forest Soil	MTFAFFVILLGIAFRECLQHAEECAQKAAELPNGSHFRQDFLQLEKRWLELARSIEFGESLDRFTKNIPKPNIKPNGHAI*
Ga0126372_111047932	3300010360	Tropical Forest Soil	MLNLSEQIRECLQHAEECARKAAELPNSSPFRQDFVRLEKRWLELARSFEFGERLDGFTKSIPKPNQSHSSLN*
Ga0126378_100839345	3300010361	Tropical Forest Soil	MLNNLSEQIRECLQHAEECARKAAELPNSSPFRQDFVRLEKRWLELARSFEFGEQLDGFTKSIPKPNQSHSSLN*
Ga0126378_103615072	3300010361	Tropical Forest Soil	LNNLSEQIRECLEHAEDCARKVAELPNASLLRQDFLRLEKRWLEPARSIEFGESLDSFTKNSRKPN*
Ga0126378_109049091	3300010361	Tropical Forest Soil	VLDKISEQIRECSEAAEHCAGKAATLPDSSPFKQDFLNLEQRWLELARSIEFGESLDRFTKNKIKLNIKP
Ga0126378_117323071	3300010361	Tropical Forest Soil	VEGLVVLNDLEQICECLRHAEECALKAAELPNGSRFRQDFIQLEQRWLEMARSIEFGEQ
Ga0126378_119918322	3300010361	Tropical Forest Soil	MRRGSVVLNSLSEEIRECLEAAENCARKAAALSDSSPFRLDFLNLEQRWLELARSIEFGESIDRFTKNGAEPNIKPNV*
Ga0126378_131568601	3300010361	Tropical Forest Soil	MLNNLSEQIRDCLQHAEDCARKAAELPGGSPFRQDFLRLEKRWLELARSFEFGE
Ga0126379_102485991	3300010366	Tropical Forest Soil	VLDKISEQIRECLEAAEHCARKAATLPDSSPFKQDFLNLEQRWLELARSIEFGESLDFTKNKIKLNIKPSPN*
Ga0126381_1001327154	3300010376	Tropical Forest Soil	VPREGGGRVVLNNLSEQIRECLQHAEECAQKAAELPNGSHFRQDFLQLEKRWLELARSIEFGESLDRFTKNIPKPNIKPNGHAI*
Ga0126381_1004043863	3300010376	Tropical Forest Soil	MAQGLRDGLYSRARADSRVMLNNLSEQIRECLEHAEECARKAAELPNDSRFRQDFLRLEKRWLDLARSIEFGESLESFTKNSPKPNIKTSPPN*
Ga0126381_1006750303	3300010376	Tropical Forest Soil	VEGLVVLNDLEQICECLRHAEECALKAAELPNGSRFRQDFIQLEQRWLEMARSIEFGERLDIFTKNGAKPNIKPNA*
Ga0126381_1006783352	3300010376	Tropical Forest Soil	VLDSVSEQIRECLEAAENCARRAAAHPDGSPLRQDFLEMEQRWLSLVRSIEFAERLDSFTKSSPKPIKPNGNAD*
Ga0126381_1007703394	3300010376	Tropical Forest Soil	MLNNLSEQIRECLQHAEECARKAAELPNSSPFRQDFVRLEKRWLELARSFEFGEQLDGFTKSIPKPNQSHSSVN*
Ga0126381_1034663102	3300010376	Tropical Forest Soil	VLGNVSEEIRECLEAAEYCACKAATPPDSSPIKQDFLNLERRWLELARSIEFGESLDRFTKNSPKAEL*
Ga0126381_1040591591	3300010376	Tropical Forest Soil	VLNNLSEQIRECLAAAENCASKASALPDTSPFKQDFLNLEQRWLELARSIEFGESLDTFTKNNPKPNIKTN*
Ga0126383_100912751	3300010398	Tropical Forest Soil	VLNNLSEQIRECLQHAEECARKAAELPNSSGFRKDFLQLEKRWLELAQSIEFGERLDSFTKNSLKPNIKPNGNAI*
Ga0126383_106587812	3300010398	Tropical Forest Soil	MLNNLSEQIRECLQAAENCARKAAELPNSSPFHQDYLRLEKRWLELAWSIEFGESLDTFAKNSAKLNIKPRV*
Ga0126383_107977172	3300010398	Tropical Forest Soil	MVDVICRGACEDRIVLDNVSEQIRECLEAAENCAHKASTLPDSSPFKQDFLNLEQRWLELARSIEFGESLDRFTKNSPKPNIKLSPN*
Ga0126383_135989781	3300010398	Tropical Forest Soil	VEGLVVLNDLEQICECLRHAEECALKAAELPNGSRFRQDFIQLEPRWLEMARSIEFGERLDIFTKNGAKPNIKPNA*
Ga0126369_100599784	3300012971	Tropical Forest Soil	VVVLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWVELAGSIEFGERLDGFTQNSAEPNHPNL*
Ga0126369_127965252	3300012971	Tropical Forest Soil	NSISEQIRECLRRAEECARKAAAHPDGSPLRQDFLDMERRWFKLARSIEFGERLNSFTKNNPKPNLKP*
Ga0182041_108357571	3300016294	Soil	QIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPNL
Ga0182041_112869361	3300016294	Soil	MINVGLLKPRASEDRIVLDNVSEQIRECLEAAENCSRKAATLPDSSPFKQDFLNLERRWLELARSIEFGESLDRFTKNN
Ga0182033_111165591	3300016319	Soil	VLNNLSEQIRECLQHAEECARAAAELPNSSPSRQDFLQLEKRWLELAGSIEFGEQLDGFTQNSAEPNHPNL
Ga0182032_106595171	3300016357	Soil	VPNNPSEQIRECLQRAEECAREAAELPNSSSFRQEFALEKRWLELARSIEF
Ga0182034_100056691	3300016371	Soil	VRAGGRVVLNNLSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGFIKNGAKSNPKPNP
Ga0182034_102379743	3300016371	Soil	MINVGLLKPRASEDRIVLDNVSEQIRECLEAAENCSRKAATLPDSSPFKQDFLNLERRWLELARSIEFGESLDRFT
Ga0182034_110834351	3300016371	Soil	VRAGGRVVLNNLSEQIRECLQRAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGFT
Ga0182034_115907192	3300016371	Soil	VLNNLSEQIRECLQHAEECARAAAELPNSSPSRQDFLQLEKRWLELAGSIEFGEELDGFIKNGAKS
Ga0182040_116206431	3300016387	Soil	VLDKISEQICECLEAAENCARKAAALPDSSAFKQDFLNLEQRWLELARSIEFGESLDRFTKNNAKPNIKLSAN
Ga0182037_103271032	3300016404	Soil	VRAGGRVVLNNLSEQIRECLQRAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGF
Ga0182037_106910591	3300016404	Soil	MLNNLSEQIRECLQHAEDCARKAATLSDSSPFRQDFLDLEQRWLQLARSIEFGESLNRFTKNSAKPNKRQRLTSFSKNCPD
Ga0182037_121119061	3300016404	Soil	VVGLHNPSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLERRWLELAGSIEFGEELDGFTKNSAEPNLPNL
Ga0182039_112130592	3300016422	Soil	VRAGGRVVLNNLSEQIRECLQRAEECAREAAELPNSSPFRQDFLQLEKRWLELA
Ga0182039_115720461	3300016422	Soil	VLDKISEQIRECLEAAENCARKAAALPDSSAFFLNLEQRWLELARSIEFGESLDRFTKNNAKPNIKPSPN
Ga0210406_104671481	3300021168	Soil	LSNSPVEPDAIEGRVVLDNVSKQIRECLEHAEECAQNAAELPNGSPFRQDFLQLEKRWLELARSIEFGEQLGSFTKNSPKPNIKPNVSR
Ga0126371_100154557	3300021560	Tropical Forest Soil	VLNNLSEQIRECLQHAEECARKAAELPNSSGFRKDFLQLEKRWLELARSIEFGERLDSFTKNSLKPNIKPNGNAI
Ga0126371_100329412	3300021560	Tropical Forest Soil	VLNNLSEQIRECLQHAEECAQKAAELPNGSHFRQDFLQLEKRWLELARSIEFGESLDRFTKNIPKPNIKPNGHAI
Ga0126371_100596664	3300021560	Tropical Forest Soil	MLNNLSEQIRECLQHAEQCARKAAELPNDSSSRQDFLRLEKRWLELARSIEFG
Ga0126371_104567003	3300021560	Tropical Forest Soil	MVNVICRGTCEDRIVLDNVSEQIRECLEAAENCACKAATLPDSSPFKQDFLNLEKRWLELARSIEFGESLDRFTKNSPKPNFNPNM
Ga0126371_105388871	3300021560	Tropical Forest Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPDL
Ga0126371_105578043	3300021560	Tropical Forest Soil	VLNNPSEQIRECLQHAEECAREAAELPNSSPFRQEFAQLEKRWLELAGSIEIGEQLDSF
Ga0126371_106831174	3300021560	Tropical Forest Soil	MVVLNNPSEQIRECLQHAEECARKAAELPNSSRFRKDFLQLEKRWLELVEKRWLELARSIEFGESINTFITNIPKPSVKPNGNGAW
Ga0126371_106985113	3300021560	Tropical Forest Soil	MLNNLSEQIRECLQHAEECARKAAELPNSSPFRQDFVRLEKRWLELARSFEFGEQLDGFTKSIPKPNQSHSSVN
Ga0126371_112537901	3300021560	Tropical Forest Soil	MRQRDNLTQEIRECLRHAAECAREAAELPDGSVFRQDFLELQNRWLELARSIEF
Ga0126371_138201711	3300021560	Tropical Forest Soil	VLNNLSEQIRECLEHAEDCGRKAAELPNGSRFRQDFLQLEKRWLDLARSIEFGEQLDSFTKNSTKPNIKPNGNAR
Ga0207700_116558421	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLNNLSEQIRDCLLHAGDCAQKAATQKDPGLRDDFLRLEKRWLELARSMEFAERLNS
Ga0207825_1077041	3300026871	Tropical Forest Soil	VLNNLSEQIRECLQHAEDCAREAAELPNSSPFRQDFVQLEKRWLELARNIEFGEQLDSFTKNSAKSNPKRNPLRS
Ga0207824_10253372	3300026990	Tropical Forest Soil	VRAGGRVVLNNPSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIGLAKS
Ga0207722_10191862	3300027003	Tropical Forest Soil	VLNNLSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGFTKNSAEPNLPNL
Ga0207855_10176211	3300027039	Tropical Forest Soil	VLNNPGEQIRECSQHAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGFTKNSAEPNLPNL
Ga0208365_10091191	3300027070	Forest Soil	VLDNVSKQIRECLEHAEECAQKAAELPDGSPFRQDFLQLEKRWLELARSIEFGEQLGSFTKNSPKPNVSR
Ga0207826_11879081	3300027680	Tropical Forest Soil	MAQGSRVSRMRAVVLNNPSEQIRDCLQHAKECAREAAELPKDSRFRQDFLQLEKRWLELARSIEFGESLDSLTKNSAKPNARPNGNVI
Ga0207862_10487371	3300027703	Tropical Forest Soil	VLNNPSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGFTKNSAEPNLPNL
Ga0318541_106471591	3300031545	Soil	MLNNLSEQIRECLNHAEDCARKAGACPDDSPFKQDFLNLEKRWLDLARSYGFGAKSAHKRRQYC
Ga0310915_105391882	3300031573	Soil	VLNNLSEQIRECLQHAEDCARKAAELPDSSLFRRDFLQLEKRWLELARSIEFGEQLDSFTKSIPKRGKSRPFLI
Ga0318555_108268431	3300031640	Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNIRA
Ga0318561_104420731	3300031679	Soil	VVVLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPDL
Ga0318574_104769562	3300031680	Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPNL
Ga0318493_103235872	3300031723	Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGELLDGFTQNSAEPNHPNL
Ga0306918_103057561	3300031744	Soil	VLNNLSEQIRECLQHAEECARAAAELPNSSPSRQDFLQLEKRWLELAGSIEFGEQLDGFTKNSAKPNQAQPLRSAAM
Ga0306918_107984641	3300031744	Soil	VLDNVTEQIRECLEAAENCARKAATLPDSSAFKQDFLNLEQRWLELARSIEFGESLDRFTKNNAKPNIKLSAN
Ga0306918_112394771	3300031744	Soil	VPNNREEIRECLGHAEDCAREAAELPNSSSFRQDFLQLEKHWLELAGSIEFGEQLDSFTKNSARSNP
Ga0318502_102682331	3300031747	Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHSNL
Ga0307477_100717203	3300031753	Hardwood Forest Soil	VLDNVSKQIRECLEHAEECAQKAAELPNGSPFRQDFLQLEKRWLELARSIEFGEQLGSFTKNSPKPNVSR
Ga0318535_104726261	3300031764	Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDSFTQNSAEPNHPNL
Ga0318509_103237771	3300031768	Soil	VLNNLSEQIRECLQHAEDCARKAAELPDSSLFRRDFLQLEKRWLELARSIEFGEQLDSFTKSIPKRGKSRSFLI
Ga0318509_106004852	3300031768	Soil	VLNNLSEQIRECLQHAEECAREAAELPNNSPFRQDFLQLEKRWLELAGSIEFGEELDGFTKNSAEPNLPNL
Ga0318547_104501921	3300031781	Soil	VRAGGRVVLNNLSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGFIKNGAKSNPKPNPLKSATM
Ga0318552_103936413	3300031782	Soil	VVVLNNPSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLERRWLELAGSIEFGEELDGFTKNSAEPNLPNL
Ga0318548_101973583	3300031793	Soil	RGAARGRVVVLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPDL
Ga0318523_103782011	3300031798	Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNS
Ga0310917_108834342	3300031833	Soil	VSVRGVGVLLNGLSEQIRECLEHAEDCARKAAELPNGSRFRQDFLNLEQRWLELARSIEF
Ga0306925_106208351	3300031890	Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHP
Ga0306925_113851891	3300031890	Soil	VLNNLSEQIRECLQHAEDCARKAAELPDSSLFRRDFLQLEKRWLELARSIEF
Ga0318520_105846832	3300031897	Soil	VVVLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPNL
Ga0306923_103725581	3300031910	Soil	MLNNLSEQIRECLQHAEDCARKAATLSDSSPFRQDFLDLEQRWLQLARSIEFGESLNRFTKNSAKPNKRQRLTSFSKNCPDVRS
Ga0306923_119118671	3300031910	Soil	VLNNLSEQIRECLQHAEDCARKAAELPDSSLFRRDFLQLEKRWLELARSIEFGEQLDSFTKSIPKRGKSR
Ga0306923_123908502	3300031910	Soil	MINVGLLEPRASEDRIVLDNVSEQIRECLEAAENCARKAATLPDSSPFKQDFLNLERRWLELARSIEFGESLDRFTKNNVKPNINRRQVRFLRQP
Ga0306921_104931711	3300031912	Soil	MINVGLLEPRASEDRIVLDNVSEQIRECLEAAENCARKAATLPDSSPFKQDFLNLERRWLELARSIEFGESLDRFTKNNAKPNINRRQVRFLRQP
Ga0306921_112360702	3300031912	Soil	VSVRGVGVLLNGLSEQIRECLEHAEDCARKAAELPNGSRFRQDVLNLEQRWLELARSIEFGESPDTFTKNLPKPKPNLSGRH
Ga0310916_102262271	3300031942	Soil	VRAGGRVVLNNLSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGFTK
Ga0310916_115017442	3300031942	Soil	VRAGGRVVLNNLSEQIRECLQRAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFGEELDGFTK
Ga0310913_104383561	3300031945	Soil	VLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLD
Ga0310910_106732391	3300031946	Soil	VDRVVLNNLSEEIRVCLQHAEECARNAAELPDGSHFRLDFLRLEKRWLELARSIEFGESPDHLYKK
Ga0310909_103256592	3300031947	Soil	VRAGGRVVLNNLSEQIRECLQRAEECAREAAELPNSSPFRQDFLQLEKRWLELAGRIEFG
Ga0306926_120511802	3300031954	Soil	VLSSLSEQIRECLEHAEECARKATELPNSSRFRQDFLQLEKRWLELARSIELGEQLDSFTKSIPKRGQSRSPLF
Ga0318531_101832061	3300031981	Soil	VVVLNNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDSFTQNSAEPNHPNL
Ga0306922_102954961	3300032001	Soil	VRAGGRVVLNNLSEQIRECLQRAEECAREAAELPNSSPFRQDFLQLEKRWLELAGSIEFG
Ga0306922_108629343	3300032001	Soil	VLNNLSEQIRECLQHAEECARAAAELPNSSPSRQDFLQLEKRWLELAGSIEFGEQLDGFTKNSAKLN
Ga0310911_107804052	3300032035	Soil	VLNNLSEQIRECLQHAEDCARKAAELPDSSLFRRDFLQLEKRWLELARSIEFGEQ
Ga0318556_102458863	3300032043	Soil	NNPGEQIRECLQHAEECAREAAKLPNSSPFRQDFLQLVKHWLELAGSIEFGEQLDGFTQNSAEPNHPNL
Ga0306924_114197942	3300032076	Soil	MINVGLLEPRASEDRIVLDNVSEQIRECLEAAENCSRKAATLPDSSPFKQDFLNLERRWLELARSIEFGESLDRFTKNNAKPNINRRQVRFLRQP
Ga0318577_104891391	3300032091	Soil	VLINLSEQIRECLQHAEDCARKAAELPDSSLFRRDFLQLEKRWLELARSIEFGEQLDSFT
Ga0318540_105598721	3300032094	Soil	VRAGGRVVLNNLSEQIRECLQRAEECAREAAELPNSSPFRQDFLQLEKRWLEL
Ga0306920_1009080794	3300032261	Soil	VLNNLSEQIRECLQHAEECARAAAELPNSSPSRQDFLQLEKRWLELAGSIEFGEQLDGFTKNSAKPNQAQPLRSAAMLPFSYR
Ga0306920_1010714183	3300032261	Soil	VLNNPSEQIRECLQHAEECAREAAELPNSSPFRQDFLQLERRWLELAGSIEFGEELDGFTKNSAEPNLPNL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F054231

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences