Scaffold Ga0126371_10015045

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10015045
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7067
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011175	Metagenome / Metatranscriptome	294	Y
F015458	Metagenome / Metatranscriptome	254	Y
F063251	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_1001504511	F063251	AGGCGG	MSEKIVSIRENESLRSATVDAIDALDREIDAVWGLIAIIEILDRESRDNHYASGALRIAHNHLDALIAIRRGLGGV
Ga0126371_100150452	F011175	GGAGG	MIRTRLPVLGAIALIVALIFNCGVAVAEPNQTSADYVMPGCRDAALLITFSNTGESEEQASLMGFCAGIVVGLSFMGQPQGICVPAGTTAQQVTGIVVQYIDAQPARIHENFNRFAVEALRANWPCSLEAAARDPLVVVSH
Ga0126371_100150455	F015458	GGAG	MTRSALIVIAAALFLGWTSLASAKSRGSAQSKPSHPAANETAPRPTVPDPYYRLSDLYYGDSDPYHGLFDFIVVPPYSPGSAYRYMRPVRR