NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10002089

Scaffold Ga0126371_10002089


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10002089 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17135
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. BK313(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035917Metagenome171Y
F045919Metagenome152Y
F077695Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_100020894F045919N/AVIASDIYTSRESTVYEIGYPQNINPQYGLMNADGSALRAVLNDYGVATDQGWLDFDTAYNIASQTPGMCSGASWYHWVGIRGVQGDTIWVANSAPGYKSVWSNLSRSDWQRLGGFSVVWL
Ga0126371_100020895F077695AGGAGGMTDQFSVGPGVAQAIADNNDEARSDERYIILDEGHRVSLTFGRDAQYFYYEEDNRVNRSPFR
Ga0126371_100020897F035917GGAGGMSEEEFQFKVVYVDPGDGLIVGMEPSGGAVGSKHKVAVLFDPNEYAVLMRTDPAYLSADKNHVLAAPDH

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