NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10000060

Scaffold Ga0126371_10000060


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10000060 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73861
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (73.97%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003650Metagenome / Metatranscriptome475Y
F072000Metagenome / Metatranscriptome121Y
F080282Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_1000006028F072000N/AVVIYTSRGAFLSPLALVVVAAIGLAALLLQLRLHKDLVDQIRAPLWLNVLGLLFAISAVVADILHLRISLLIVAALGAVVCFAISGVRVLQGIRRQRK
Ga0126371_1000006043F003650GAGMTQRMVAILILTCSWSAAQQAAAQATATPQPSDQADSELVIQNDSPLPDAYPHANYEFLFHARGGVPTLRWRVEKGDLPPGMKLDDHGLLHGQPEHAGEFHFTIAVRDGSQPQQAVQKEFVLRVLAALSLRWKQEAHVDGNRIDGSAAVSNATPDDIDLTFIVLAVPPNGRAVAIGYQHFRLRRGTFDMELPFGDTLPRGGYVVHVDAIGEVPPRNVIYRERMQTPSALQVNVGP
Ga0126371_1000006061F080282GGAMYISYGLALAVIFVFGAVLWGMTRWRLDKIAIGAVLLFLPFVPILTFLSRVLWIYLDQTFDPESK
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Biomedical Sciences Research Center "Alexander Fleming"
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