NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210409_10287518

Scaffold Ga0210409_10287518


Overview

Basic Information
Taxon OID3300021559 Open in IMG/M
Scaffold IDGa0210409_10287518 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1483
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F031613Metagenome / Metatranscriptome182Y
F070523Metagenome / Metatranscriptome123Y
F103612Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0210409_102875181F031613AGGAGMAITISLSPLNVDSSANNFVYAIGTLTFSGNYPTGGDTLDFTQV
Ga0210409_102875182F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRAIGNAGGGGFIQDDALLVVTAVTQMDTSLQVSITDATAPPNQLPTDLLVPVKIWERPSGSTGDFLEMVDLTQHGGLPSRAQDVALSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSARTGYTPF
Ga0210409_102875183F070523AGGAVKKDKMSLFPDERVAIHAELGSVLKGGDPAEILLVIILLLALRPPSRRKAPKRKGGQSSKPKNT
Ga0210409_102875184F103612N/AAAVGIDPQHFNLQSGSGATLRIAAAAALINAVIGVAAYLQKSPLPTE
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