Scaffold Ga0210409_10056925

Overview

Basic Information

• Taxon OID: 3300021559
• Scaffold ID: Ga0210409_10056925
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3662
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000673	Metagenome / Metatranscriptome	944	Y
F021825	Metagenome / Metatranscriptome	217	Y
F097751	Metagenome / Metatranscriptome	104	Y
F105673	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_100569252	F097751	GAGG	MRSWLAMLFYIDHKCTTQPGFRKTFLVLILIFVFLLWSPWRPLLCPVFGVCPAPVVRADTSAQPKPQGPRVNHSRRPASTPTLIQIPAEPSVQAAPHP
Ga0210409_100569255	F021825	AGG	MKKDYQHCLEKLATAAPETKSALIRSLLPAIETALNSGQRLKAIWEALRREGLQMSYHSFHKTVSRSRQMKKPTPASGLGKHEEAPAAQGSMETKVAAVEGRDPFANLKRLEENRPGFHWRATRNLKTSVNEREDFSDKHNR
Ga0210409_100569256	F105673	AGGAG	MRCSWIIGERPGDWNIKGWGHFVVYFRLNFLHFLRFGWYHFEEEVVPLWYRS
Ga0210409_100569257	F000673	AGGAG	VDKKGFSRNFRYPSAELRDQVRAAVKERGFRSEQAFLIAACEHEIRQGANTKATEQFEARVAATLTNLAKQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEG