Scaffold Ga0214517_100310

Overview

Basic Information

• Taxon OID: 3300021540
• Scaffold ID: Ga0214517_100310
• Source Dataset Name: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21046
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.4149
  • Long. (^o): -119.841
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086383	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214517_10031023	F086383	GAGG	MTLHIALDGIYVNVNHIIVQKLVEYFASKSYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL