Scaffold Ga0194048_10015027

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10015027
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3446
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F005531	Metagenome / Metatranscriptome	397	Y
F013527	Metagenome / Metatranscriptome	270	Y
F050376	Metagenome / Metatranscriptome	145	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1001502711	F050376	AGAAGG	MNLAEYKAHVEAQRKESLLKAIATMSEANDKMSSLFNTKEAE
Ga0194048_1001502713	F005531	AGAAG	MTITYSLWQGSNLLSVDNTAKNSAELLAVMSELEKLGKGFTYNVRKVEVKN
Ga0194048_1001502714	F085710	AGGTGG	MDYDDYYNDIYLEIYEEFGADSVSNPAYAEQLAKDKGVR
Ga0194048_100150274	F000447	GAG	MGYIEIFRIDENGAGWVDFSEATPDELFQIEIGLLNEGAFE
Ga0194048_100150277	F001562	GGA	MKSQFELDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE
Ga0194048_100150278	F013527	GAG	MKNFEFLTYITVEAESYDEAIDVFQFQLKYGMNKDNVYVADIKDLELSE