Scaffold Ga0194048_10011809

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10011809
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3955
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F024319	Metagenome / Metatranscriptome	206	Y
F027847	Metagenome / Metatranscriptome	193	Y
F045756	Metagenome	152	Y
F066779	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1001180910	F066779	AGGA	MFSLKYKVEMNTNPLYPLSREFSTCLGVLMNTEQDANEYLDLLALRGTILEVELVELENYKPSTRKVYATTRSWE
Ga0194048_1001180912	F045756	GGAG	MTKHNVLISYVCESETELEAIFALNKSLRVLSENELEKFNAFLVEKVE
Ga0194048_1001180913	F024319	AGG	MTNRIWESRNDYQNESDAMRLGYVSCSAGCGRVTAWSLCTMCGGNYAEHNLVGKEVK
Ga0194048_1001180914	F003965	AGGA	MTSLITVCKEHTPHLSSISEVGDDQFTFCENCENNIERWYDDTDPERLPMWTDWKVSK
Ga0194048_100118099	F027847	GGA	MNPFTYMIDWLDDNADYAPIGAFIGVAIAIVICIVAG