Scaffold Ga0194048_10007126

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10007126
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5247
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035216	Metagenome	172	Y
F047567	Metagenome / Metatranscriptome	149	N
F068742	Metagenome / Metatranscriptome	124	N
F094923	Metagenome / Metatranscriptome	105	Y
F097184	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000712610	F094923	N/A	MDADKDLVARANRTMAAIRTMIRIILTSAILGLLWLLWRLCQ
Ga0194048_1000712611	F035216	N/A	MIITYIIVSSIIATGAFAVGLSKRRERRRLGTMVCEAHIPHRLEQPVSEIAKLKMELELVTLQLESERLESDRLRSIIRSTLR
Ga0194048_100071263	F097184	N/A	MRAVCQVCGAVWCGPTLGRLYHCDSATRPKIDQTKAQPYKVEKIAGKMLGRTVCECGQPAVRPSSCDTSAKVCQRCHDCELGGYSVRSAKAGTDHTYRVRLPRKNL
Ga0194048_100071265	F047567	AGG	MISLEKLHATKREAAAMLTEIVERIHKTEWMRETVECVGLDPLELYEVVKVGNRWHIKATAQHLKAAKALRPKGYGV
Ga0194048_100071269	F068742	N/A	MSQNISISIDLKLIDQKKLKRITRQSGAEAAFLDLIMIPTPDSPYGEYMIKQRSTKEEVEAKVQTPILGNGKTAVKWEGQ