Scaffold Ga0194048

Basic Information
Taxon OID	3300021519 Open in IMG/M
Scaffold ID	Ga0194048_10005042 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0194048_10005042 Open in IMG/M

Source Dataset Name

Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6330
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (40.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6330

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (40.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.697	Long. (^o)	-93.722	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Ontario

Coordinates

Lat. (^o)

49.697

Long. (^o)

-93.722

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035216	Metagenome	172	Y
F047567	Metagenome / Metatranscriptome	149	N
F050981	Metagenome / Metatranscriptome	144	N
F068742	Metagenome / Metatranscriptome	124	N
F078382	Metagenome / Metatranscriptome	116	N
F094923	Metagenome / Metatranscriptome	105	Y
F100656	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100050421	F100656	N/A	SLNRPMTTLKNSLILLALCMLCACQTPRPKPSPAVVSVAQAKASTASASVAVRSAIDDSKATTTELKKIRTAQDRVDAKSVLILKWLEFQR
Ga0194048_1000504214	F047567	N/A	MICSLEKTHATKREATAMLAEIVQKITETTWMAATVHRVHMDPHELYEVVKVGNRWHIKATAQHLKAARALRPKGYGV
Ga0194048_100050422	F050981	GGAG	MKWLAIILLSASSVCAQISDDELSKISKEEIVLTIKHLRALTADAKDAADKAIASEKAMQAKLVDATDALIHSQSQLLKVDQDIRNLQAQTDEQTRIAVGAKADAVKAKKLADHRGNLLGWLGAGLLCVVCLKLTSILPPPYGFLLPVAAIPAGYWLARLLL
Ga0194048_100050423	F078382	AGG	MSLGNAFRHGLELLLVSLAVFLSRTLWVTIGGLYVVWLVHSSDVATLYTLDNAAQLQAFTQLALCRYGLIGSIVLGYLGFTKGSTGVAGYVIDKLNPKDS
Ga0194048_100050427	F035216	N/A	MIITYIILSSIIATGAFAVGRAQRRENRRLGAMVCEAHIPHRLETPVSEIAKVRMELELVTLQLESERLESDRLRSIIRSTLR
Ga0194048_100050428	F094923	GGAG	MDADKDLVARANRTMAAIRTMIRIILVSAILGLLWLLWRICA
Ga0194048_100050429	F068742	N/A	MSQNISLSIDLKLIDQKKLKRMTRQSGAEAAFLDLIMIPTPGSPYGEYMIKQRSTKEEVEAKVQTPILGNAKTAVKWEGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194048_10005042

Overview

Ecosystem & Geography

Associated Families

Sequences