Scaffold Ga0194048_10004813

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10004813
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6500
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F088293	Metagenome	109	Y
F105027	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100048133	F088293	AGGAGG	VSVEQRILDLPAFADYNDRRQLRAIAMDVRKLEDRIKQLEEENDAMRADLLLWRESK
Ga0194048_100048134	F001259	GGAGG	MRDCAFIYVHAWNGTIRVESLDTARNIDGNPEWKHVSTINPHVVLESILRASIKDRNQIIKHLLK
Ga0194048_100048139	F105027	GGAGG	VSDIVHRKVTIVIEDAEGGFTLSMDCVPPIEDDGSQVRPTPALMAGSVARRAIEELVNRQTPEAPPEAAN