Scaffold Ga0194048_10002161

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10002161
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9756
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F003422	Metagenome / Metatranscriptome	487	Y
F003965	Metagenome / Metatranscriptome	459	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011299	Metagenome / Metatranscriptome	292	Y
F013527	Metagenome / Metatranscriptome	270	Y
F015208	Metagenome / Metatranscriptome	256	Y
F017133	Metagenome / Metatranscriptome	242	Y
F017829	Metagenome / Metatranscriptome	238	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100021611	F003965	AGGTGG	MTTITMCREHNPMKSAISEVSDTQYTFCQDCEQNIERWYDDTDPERLPMWTEWRVR
Ga0194048_1000216111	F007263	AGG	MIKEYLDENEFYFIKDEIKIHCDEQQFIHVCKAHGEQMGCYFCEFDYSKDCECEG
Ga0194048_1000216113	F015208	GGAG	MYKITVANDSEPLHFIKEYSDELEAHTEFAKFIDWGFADEYSTVNLYTPSGKCYTKVFYREGRRVVTK
Ga0194048_1000216114	F013527	AGAAGG	MEIFEFNTFIDVEAESYDEAIDVFQFQLKYGINKDNVYVADINQLTNNNESVEV
Ga0194048_1000216115	F011299	GAGG	MTRKDYVAVAEILKYASDKTHPALFSKIVNDFAEMFAKDNERFDVTRFHEASGYHVTKLTSR
Ga0194048_1000216124	F017829	AGG	MANRFRVEIYDANKLNDVTIYSDQGVDKEYLTELVFSNMKNFSGKINAYVFDSVKKKKTTAMFIDESVVQKVKAQTSQLTKVGLGL
Ga0194048_1000216127	F003422	N/A	MTNELVSSIYTFVCDPDECDCLIQLTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATITSLNQTKEGNNMDGMTVENLPLSDSEKYNPDQLVTYKVISGYSDATYATDKVRNIEWELHNSRTNSKAVSSLQNKISLVKDIITEAYADSDDQDTLRTIAEALEIELTREVEWSATIEVSGTLTIDLLESTVDDVEQEIYDNLYVDSQNGQIEIVDTEVCNVREN
Ga0194048_1000216128	F000311	GAG	MYFELTAPDRLSMEMAYWDAQMIGLDPTALSPLTFNIGTGSIEKVSRIRDKYNLTESYISDYEPTGYTGR
Ga0194048_1000216129	F001043	N/A	MNRQDTQGDNMSDYKDGFQDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGNQL
Ga0194048_100021613	F085708	GGA	MNRLITTLVQIALLVPALYMGRMMWREIVADFREWDKSH
Ga0194048_1000216131	F001125	GGCGG	MGDRANFGFRDSKGDTLYLYGHWAGSEMLHHLATAVAKAQPRWTDEAYATRICISQLVAQEWESETGWGLYINHIGDNEHKVPVIDWSKKTFTLYEEDLSQVVFSLPIDKFVDKYSRLVM
Ga0194048_100021614	F000447	AGGAGG	MGYVEIFRMDEEGAGWVDLSEATPDELFNIELGLLEEGAFE
Ga0194048_100021615	F017133	AGG	MASNWTTFATVRDYPAGLMNLCPCGQVVLAPALYHEGQPHWDNPDRCKELWAISQK