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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021519 Open in IMG/M |
| Scaffold ID | Ga0194048_10000188 Open in IMG/M |
| Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28601 |
| Total Scaffold Genes | 48 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (16.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 49.697 | Long. (o) | -93.722 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008751 | Metagenome / Metatranscriptome | 328 | Y |
| F021090 | Metagenome | 220 | Y |
| F038238 | Metagenome / Metatranscriptome | 166 | N |
| F059961 | Metagenome | 133 | Y |
| F062755 | Metagenome | 130 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194048_1000018810 | F062755 | N/A | MKVEKKEVVCIRLPESIKKKVDAEAKKMYLAPSKLVSIIVQKYYETKNQ |
| Ga0194048_1000018811 | F038238 | N/A | MKLDYQGKQLKLHKRATCLLELLKKAQSEQWRQEKLLAEWRSAGNFDNVRLFTHENNYLIRIAELNDIQKRILKSYYWLIVELYSISENFMLPINLVQ |
| Ga0194048_1000018816 | F059961 | N/A | MIGQNNTKTMNEFPSIDLMIGQLNKSITEIEETSLSNENFVLRTLNAALRLALDIKKEELNYFKTKNN |
| Ga0194048_100001882 | F021090 | N/A | MITINEQQLKDLEAFINTIPTAYGLPLLQFLGKLNAEQNPPVEDAKVD |
| Ga0194048_100001883 | F008751 | AGTAG | MQSVVIFIAGQAIFIIIGLISIYVKVSLKLKELEVRVSMVEKQDDIIAKKLDLIQATLNGLAIALQNKQDRE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |