Scaffold Ga0194045_1000090

Overview

Basic Information

• Taxon OID: 3300021516
• Scaffold ID: Ga0194045_1000090
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26268
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (42.86%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.753
  • Long. (^o): -93.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F008129	Metagenome / Metatranscriptome	338	N
F009398	Metagenome / Metatranscriptome	318	N
F013755	Metagenome / Metatranscriptome	268	Y
F014374	Metagenome / Metatranscriptome	263	Y
F018171	Metagenome / Metatranscriptome	236	Y
F037116	Metagenome / Metatranscriptome	168	N
F038227	Metagenome / Metatranscriptome	166	N
F103227	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194045_100009022	F018171	N/A	MANTQGRKYIFGSPATLNLYNAAGAEIMAAVISPDLESYDISHEADTEEVRDSSGEVVGHIGYNNRITLTVNFIPSGTSTANALLSASLPNVNGTAIITGAPVIVMGGFTNAINADTSNRWIYAGGGSIKTTQSGKSTGTITLKKYPSIAASGAATNL
Ga0194045_100009023	F006107	GGA	MNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLIVSTNSARPMQRTDLTCEIEIAVELQLSADDTDESAMLTTVQVLDNRILPLFDDTGASALDAAANDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATL
Ga0194045_100009024	F005024	GAG	MTVDSSNFDAAMKQYLLSTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRISDYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNQGFSQFQSAKWKPLSKPSGYKAPKQTNAALVSLANQYGLNEENVATHKGTKARGFQAVPGFNPTASVVMTAGVADSQYNRVAGIYNTAMQKAFDDETTEMVNHMTEALLANGKVLEDNGISIK
Ga0194045_100009025	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWQGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTRFSRLQREDAGFVLLENTDRIALTFCKPKPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0194045_100009029	F037116	N/A	MEPTNSSTSPGLSLAAAAGATAVSFLPVLTDWVRLITALIGLACAIYAAYRLFRSK
Ga0194045_100009030	F002843	N/A	MIVPVNIVAVQCNQNNSLFVTTGTDYDNSGTIVGSEITSQYTLNPGDSLEGQPVEVVNIANALWTPAVVAAYKAANPVVEAVQPNE
Ga0194045_100009033	F038227	GAG	MISLGIALNRLFSGQAGGTDAPVLRRDVLREDEGFLWQEDGTSKLVITLGTFDSLLREDAGFLQQEDLFKLAIQSN
Ga0194045_100009038	F006262	GGA	VKIRPEVFTFTVAIKRAYLRSVYATLGGVTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLINDYDLAVDYLEQDGILTPTNAQIYTKMVAVVLIAATSFGGDFSNFRREASYRGMS
Ga0194045_100009039	F008129	GGAG	VQQERTETAATVTVDGGRRYLTADVQAVAPFLWWVCREWKDGNSTLVAAGHADDFAALRRVQVALEVHDMDVGIDSGFNTQTVYDACASYSSVTSNPINFPCGLRYPPEGGLRKPMVIGWMPLKGRETGARFTAATGAVHPFGLSTSSSMRTDVVQPLLVFDTEHLRDMLSRLRKGDIDREWGVHQDPPSVQAEGAYIAEPDLYWRHLDSHVLRPQANRAGRIKHVWVKRNQKWPDHLHDCEIMQLAMVMLWNDLVTSSESIAS
Ga0194045_100009042	F014374	N/A	LTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWK
Ga0194045_10000908	F103227	AGGAGG	MKDSFAFIYVHKTNGAIRVESLDTARKVDGRPEWKHVATVNAHVCLENILTASTRQRTQYIKDLLK
Ga0194045_10000909	F013755	N/A	MISDTPITDGTPHNVADLGMLCRRFERFAAGRQAYIDQLEAENDALRADLLLWNDKEVK