NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194045_1000020

Scaffold Ga0194045_1000020


Overview

Basic Information
Taxon OID3300021516 Open in IMG/M
Scaffold IDGa0194045_1000020 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44921
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (43.66%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.753Long. (o)-93.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F001259Metagenome / Metatranscriptome735Y
F001272Metagenome / Metatranscriptome733Y
F001964Metagenome610Y
F002227Metagenome580Y
F003748Metagenome / Metatranscriptome470Y
F005388Metagenome / Metatranscriptome402N
F005740Metagenome / Metatranscriptome391N
F006135Metagenome / Metatranscriptome380N
F010673Metagenome300Y
F012111Metagenome283N
F026825Metagenome / Metatranscriptome196N
F038648Metagenome / Metatranscriptome165N
F077447Metagenome / Metatranscriptome117N
F097206Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0194045_100002012F077447AGGAVQVEVISDDVEIRIGEMKWVGVAYTRDGKSKVYVRTKAEFKAKFIPVIEQAP
Ga0194045_100002015F097206GGCGGVIHKANRPPSPEELKQLLIMAFGMGMVVASAYFILFVLK
Ga0194045_100002020F006135N/AMSTHIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHQGDIDWANVKAMSSDDLNATFGSTYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTVAYNGVQSTPMKSE
Ga0194045_100002023F001259AGGAGGMRSNYAFIYVHAFNGTIRVECLDTARNIDGNPEWKHVSTVNPHVILESILRANGKERNLIIKHLLK
Ga0194045_100002025F003748N/AMFSVNRKDAGGRYIDAEGDYTVTVSKVEETLDAKGREVCKVTFKTEDGASITDRYINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLELLITARSEEYQVNGETKKTLRIKNMREVPIAQVDADDLDPKPF
Ga0194045_10000203F005740GAGMKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQESGYGLLGGENGACVGKQLVDRGTVISYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGNWIRTQSGGVWIDGEKLTLALPYVQSTKKFISLSGVIRDATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0194045_100002031F001964GGAGMSRNLFGKPLYKVQISGAIGWSDLKQRVVKFETVEFASRKDAERAARELNPGEYTQGRIRVVPVELSEDYDVYPVVERMSEKHPN
Ga0194045_100002032F002227N/AMKLTIQSKQNAQTIVDLFNAILTGEEQENGAKPLSIYDDNKHICSLVAKDGHQILELIIEREEGDMLVQIGEPETL
Ga0194045_100002037F010673N/AMNPKLLPVLERILSRDTVLSPFHADRLPQSALAYIRQNYRMDSFLSDEDQDLIEMLAPFADHIADSFREDESSDASKYHLFQDGSLWFSTNAYQSIWADARDFAVEVLLPQMSLSRMDADLLRAIEMDDAIESVRQDFFTAFARIVSHELEIQWSEARERWYNYCQSTGESDRLELGGYRQGEAEAREYLEWIKTIA
Ga0194045_100002045F000922AGGMRIGKQAWEKAKALYFAGQSWDAIANDLQLNKATLTNKASIEGITKVKREARAISPRKEISIESLSILVRSKLAADAAATLERVDGYSLDGIKDESVRESILGSVAKRSALVFGWSEAGEATSVSINLLGSMPDRFAEVVVSNPV
Ga0194045_100002048F005388N/AMACTNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGSNSGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFITYSSDGPVFPLYIGLEASQRIAQNNPAFRDDQRFADMGTGEGAQLLKRIGANRVIKNFRHVPNLFPPRYSYAGGKYTLVQPFTSTSGTKGTVFSVNSSWTTAAYEAAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLDTDCPDPLDKKGQHYAEFIHAPEPIFVNQGMTIIFRRCTGALTTIICS
Ga0194045_100002050F038648GGAGMPSFTLPKGVEVPENLAEGEAFQTMATILLGKNGKAEVIEIDGMPIAGYEKKSKGKKMAEDHAENASEDESGHGGQMGGGKQGFIAEVMQRGAGPMS
Ga0194045_100002055F001272N/AMIKIELTVEQANTLLQLIDIAIKAGGFQNAKVGVPLAEIILEAAKSQVPAAN
Ga0194045_100002056F026825N/AMTDHHTFFRDISIGVGGPIIGILGNAVLSDPHLKTVSLGLGALAALLTCAVKAVELYRKLKTEK
Ga0194045_100002070F012111AGGMSERAPRRYTDGSVTFEGGVDSGVMPSEVDKNQVAFAVNASFRQSFVSPRPGFIQKDYETCLSITADNTLVTADQTNVTADGYSEECYSSGGLTGVFQCALPYIGDNGSTFILMLISGKVWLYDCLQNSVQNLSATPDLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATIDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITTMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQTISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNIIDNDQTDLLWASSAVVFDNRLLMTSQPRYNAEGVVHKSLVVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKTENAYGDRCFSIARGLDGTIQIWEISKTEKFDNNLSDGKKEIQWLVQTRAYNFELPFGLKRLDSGDIFIDSLDGDVSFNIEYRPDQYPGWIEWADWTECAATLQCQPVCPLSNFQPQYRPKMRLPTPSDIPCNLSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLEGCDVNPFLYTSE
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