Scaffold Ga0210410_10003578

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10003578
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13736
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000313	Metagenome / Metatranscriptome	1323	Y
F049791	Metagenome / Metatranscriptome	146	Y
F087482	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000357810	F000313	N/A	MKIIEQWLLFKYVDGQFTPLSKPFKTKDQAEKARLKLPERERGSVGVGAIRIKK
Ga0210410_1000357811	F049791	N/A	MPQVQMKQSYIPMTIYCGHCQQEQVVHMQARTGFWQMAHQSVKCVKCEQQFDVMIPDAIVAGPFLPLNLLT
Ga0210410_100035783	F087482	AGTAGG	MSPFSAPFFWGTQKRGLLLPRRAAALWEGTQWGKGGTGKAEAAKLPDAGISLKQCPGK