Metagenome Family F087482

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087482
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	58 residues
Representative Sequence	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLQDAGISLKQCPEK
Number of Associated Samples	88
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.45 %
% of genes near scaffold ends (potentially truncated)	40.91 %
% of genes from short scaffolds (< 2000 bps)	59.09 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.545 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (37.273 % of family members)
Environment Ontology (ENVO)	Unclassified (40.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.81% β-sheet: 0.00% Coil/Unstructured: 94.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00436	SSB	14.55
PF12704	MacB_PCD	4.55
PF03551	PadR	3.64
PF00857	Isochorismatase	1.82
PF00484	Pro_CA	1.82
PF02517	Rce1-like	1.82
PF00144	Beta-lactamase	1.82
PF00589	Phage_integrase	1.82
PF13302	Acetyltransf_3	1.82
PF13671	AAA_33	0.91
PF13185	GAF_2	0.91
PF00239	Resolvase	0.91
PF13560	HTH_31	0.91
PF00437	T2SSE	0.91
PF02687	FtsX	0.91
PF13290	CHB_HEX_C_1	0.91
PF01548	DEDD_Tnp_IS110	0.91
PF08386	Abhydrolase_4	0.91
PF14026	DUF4242	0.91
PF12697	Abhydrolase_6	0.91
PF07690	MFS_1	0.91
PF10865	DUF2703	0.91
PF01433	Peptidase_M1	0.91
PF12867	DinB_2	0.91
PF01867	Cas_Cas1	0.91
PF02195	ParBc	0.91
PF03992	ABM	0.91
PF04389	Peptidase_M28	0.91
PF13714	PEP_mutase	0.91
PF12770	CHAT	0.91
PF13174	TPR_6	0.91
PF00486	Trans_reg_C	0.91
PF12833	HTH_18	0.91
PF07609	DUF1572	0.91
PF13602	ADH_zinc_N_2	0.91
PF13482	RNase_H_2	0.91
PF13432	TPR_16	0.91
PF00231	ATP-synt	0.91
PF00756	Esterase	0.91
PF00106	adh_short	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	14.55
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	14.55
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	3.64
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	3.64
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	3.64
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.82
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.82
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.82
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.82
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.82
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.82
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	1.82
COG0224	FoF1-type ATP synthase, gamma subunit	Energy production and conversion [C]	0.91
COG1518	CRISPR-Cas system-associated integrase Cas1	Defense mechanisms [V]	0.91
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.91
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.91
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.55 %
Unclassified	root	N/A	25.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.55 %
Unclassified	root	N/A	25.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.55 %
Unclassified	root	N/A	25.45 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	38.18 %
Unclassified	root	N/A	25.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	20.91 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.27 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.55 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.91 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.55 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.91 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.91 %
Dictyobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae	0.91 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.91 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.91 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.91 %
Dictyobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter	0.91 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.91 %
Dictyobacter formicarum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter → Dictyobacter formicarum	0.91 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.91 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005167\|Ga0066672_10023752	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3254	Open in IMG/M
3300005172\|Ga0066683_10847595	Not Available	528	Open in IMG/M
3300005450\|Ga0066682_10376436	Not Available	912	Open in IMG/M
3300005467\|Ga0070706_100700326	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300005471\|Ga0070698_100066019	All Organisms → cellular organisms → Bacteria	3643	Open in IMG/M
3300005537\|Ga0070730_10002986	All Organisms → cellular organisms → Bacteria	15300	Open in IMG/M
3300005537\|Ga0070730_10155487	Not Available	1548	Open in IMG/M
3300005542\|Ga0070732_11029803	Not Available	504	Open in IMG/M
3300005553\|Ga0066695_10443271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300005602\|Ga0070762_10534699	Not Available	772	Open in IMG/M
3300005921\|Ga0070766_10028696	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3009	Open in IMG/M
3300005921\|Ga0070766_10880593	Not Available	613	Open in IMG/M
3300006102\|Ga0075015_100870574	Not Available	545	Open in IMG/M
3300006176\|Ga0070765_101535260	Not Available	627	Open in IMG/M
3300006804\|Ga0079221_10094516	Not Available	1454	Open in IMG/M
3300006893\|Ga0073928_10288266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1238	Open in IMG/M
3300007258\|Ga0099793_10010263	All Organisms → cellular organisms → Bacteria	3603	Open in IMG/M
3300009088\|Ga0099830_11219326	Not Available	625	Open in IMG/M
3300009088\|Ga0099830_11839281	Not Available	506	Open in IMG/M
3300009089\|Ga0099828_11388561	Not Available	620	Open in IMG/M
3300009143\|Ga0099792_10060743	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
3300011269\|Ga0137392_10182636	All Organisms → cellular organisms → Bacteria	1709	Open in IMG/M
3300011269\|Ga0137392_10365238	Not Available	1196	Open in IMG/M
3300011269\|Ga0137392_11134088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300012096\|Ga0137389_10095626	Not Available	2350	Open in IMG/M
3300012096\|Ga0137389_10970716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300012199\|Ga0137383_10119870	Not Available	1919	Open in IMG/M
3300012202\|Ga0137363_10040627	All Organisms → cellular organisms → Bacteria → Acidobacteria	3276	Open in IMG/M
3300012202\|Ga0137363_10376769	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300012203\|Ga0137399_10021691	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4222	Open in IMG/M
3300012205\|Ga0137362_10037930	All Organisms → cellular organisms → Bacteria	3864	Open in IMG/M
3300012205\|Ga0137362_10140195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2061	Open in IMG/M
3300012205\|Ga0137362_10703368	Not Available	868	Open in IMG/M
3300012351\|Ga0137386_10043617	All Organisms → cellular organisms → Bacteria	3084	Open in IMG/M
3300012357\|Ga0137384_10651341	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300012357\|Ga0137384_11093372	Not Available	639	Open in IMG/M
3300012361\|Ga0137360_10012431	All Organisms → cellular organisms → Bacteria	5465	Open in IMG/M
3300012361\|Ga0137360_10420467	Not Available	1129	Open in IMG/M
3300012582\|Ga0137358_10038755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3151	Open in IMG/M
3300012683\|Ga0137398_10167376	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300012917\|Ga0137395_11225170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300012918\|Ga0137396_10086261	All Organisms → cellular organisms → Bacteria → Acidobacteria	2220	Open in IMG/M
3300012923\|Ga0137359_10025760	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5018	Open in IMG/M
3300012923\|Ga0137359_10040525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4031	Open in IMG/M
3300012925\|Ga0137419_10218181	Not Available	1422	Open in IMG/M
3300012927\|Ga0137416_10004105	All Organisms → cellular organisms → Bacteria → Acidobacteria	8067	Open in IMG/M
3300012927\|Ga0137416_10265892	Not Available	1407	Open in IMG/M
3300012929\|Ga0137404_12265386	Not Available	508	Open in IMG/M
3300016387\|Ga0182040_10087150	All Organisms → cellular organisms → Bacteria → Acidobacteria	2079	Open in IMG/M
3300017657\|Ga0134074_1243028	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300017961\|Ga0187778_10002685	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12080	Open in IMG/M
3300017961\|Ga0187778_10014627	All Organisms → cellular organisms → Bacteria → Proteobacteria	4844	Open in IMG/M
3300017999\|Ga0187767_10370985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300018012\|Ga0187810_10066316	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300018482\|Ga0066669_10032405	All Organisms → cellular organisms → Bacteria	3103	Open in IMG/M
3300018482\|Ga0066669_12041134	Not Available	539	Open in IMG/M
3300020579\|Ga0210407_10231186	All Organisms → cellular organisms → Bacteria	1439	Open in IMG/M
3300020579\|Ga0210407_10587654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300020580\|Ga0210403_10614087	Not Available	877	Open in IMG/M
3300021404\|Ga0210389_10037823	All Organisms → cellular organisms → Bacteria	3704	Open in IMG/M
3300021405\|Ga0210387_10028536	All Organisms → cellular organisms → Bacteria	4388	Open in IMG/M
3300021420\|Ga0210394_10000080	All Organisms → cellular organisms → Bacteria → Acidobacteria	230023	Open in IMG/M
3300021432\|Ga0210384_10006964	All Organisms → cellular organisms → Bacteria	11967	Open in IMG/M
3300021477\|Ga0210398_10173733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1755	Open in IMG/M
3300021479\|Ga0210410_10003578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13736	Open in IMG/M
3300024330\|Ga0137417_1412585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1793	Open in IMG/M
3300024347\|Ga0179591_1211409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2308	Open in IMG/M
3300025906\|Ga0207699_10387134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter → Dictyobacter formicarum	993	Open in IMG/M
3300025915\|Ga0207693_10202972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1559	Open in IMG/M
3300026285\|Ga0209438_1082329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300026329\|Ga0209375_1280845	Not Available	546	Open in IMG/M
3300026528\|Ga0209378_1006022	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7821	Open in IMG/M
3300026548\|Ga0209161_10019303	All Organisms → cellular organisms → Bacteria	4932	Open in IMG/M
3300026551\|Ga0209648_10179258	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300026552\|Ga0209577_10642658	Not Available	616	Open in IMG/M
3300026557\|Ga0179587_10206676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1245	Open in IMG/M
3300027512\|Ga0209179_1004331	All Organisms → cellular organisms → Bacteria	2134	Open in IMG/M
3300027562\|Ga0209735_1042735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	964	Open in IMG/M
3300027603\|Ga0209331_1167792	Not Available	514	Open in IMG/M
3300027737\|Ga0209038_10251387	Not Available	530	Open in IMG/M
3300027846\|Ga0209180_10001589	All Organisms → cellular organisms → Bacteria	11284	Open in IMG/M
3300027855\|Ga0209693_10066679	All Organisms → cellular organisms → Bacteria → Acidobacteria	1773	Open in IMG/M
3300027857\|Ga0209166_10000401	All Organisms → cellular organisms → Bacteria → Acidobacteria	49699	Open in IMG/M
3300027857\|Ga0209166_10000498	All Organisms → cellular organisms → Bacteria	43204	Open in IMG/M
3300027857\|Ga0209166_10001341	All Organisms → cellular organisms → Bacteria	20827	Open in IMG/M
3300027875\|Ga0209283_10306202	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300027884\|Ga0209275_10003270	All Organisms → cellular organisms → Bacteria	6688	Open in IMG/M
3300027903\|Ga0209488_10091506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2273	Open in IMG/M
3300027903\|Ga0209488_10520158	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300028536\|Ga0137415_11346267	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031057\|Ga0170834_111380161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	985	Open in IMG/M
3300031128\|Ga0170823_17248894	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	961	Open in IMG/M
3300031715\|Ga0307476_10000648	All Organisms → cellular organisms → Bacteria → Acidobacteria	25302	Open in IMG/M
3300031718\|Ga0307474_10033103	All Organisms → cellular organisms → Bacteria	3796	Open in IMG/M
3300031718\|Ga0307474_10544178	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300031718\|Ga0307474_10739546	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	777	Open in IMG/M
3300031719\|Ga0306917_10023586	All Organisms → cellular organisms → Bacteria	3842	Open in IMG/M
3300031720\|Ga0307469_10609068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	977	Open in IMG/M
3300031736\|Ga0318501_10291605	All Organisms → cellular organisms → Bacteria → Acidobacteria	869	Open in IMG/M
3300031754\|Ga0307475_10260417	All Organisms → cellular organisms → Bacteria → Acidobacteria	1390	Open in IMG/M
3300031796\|Ga0318576_10241350	Not Available	852	Open in IMG/M
3300032160\|Ga0311301_10390388	All Organisms → cellular organisms → Bacteria	2140	Open in IMG/M
3300032261\|Ga0306920_100101880	All Organisms → cellular organisms → Bacteria → Proteobacteria	4251	Open in IMG/M
3300032770\|Ga0335085_10071816	All Organisms → cellular organisms → Bacteria	4578	Open in IMG/M
3300032770\|Ga0335085_10565065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1286	Open in IMG/M
3300032783\|Ga0335079_10071935	All Organisms → cellular organisms → Bacteria	3936	Open in IMG/M
3300032828\|Ga0335080_10585289	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300032892\|Ga0335081_10062460	All Organisms → cellular organisms → Bacteria	5759	Open in IMG/M
3300033004\|Ga0335084_10098092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3044	Open in IMG/M
3300033405\|Ga0326727_10258099	All Organisms → cellular organisms → Bacteria → Acidobacteria	1786	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.36%
Aquatic	Environmental → Aquatic	3.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.45%
Freshwater	Environmental → Aquatic → Freshwater	1.82%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.91%
Sediment	Environmental → Aquatic → Sediment	0.91%
Peat	Environmental → Terrestrial → Peat	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.36%
Loam	Environmental → Terrestrial → Soil → Loam	10.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	37.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.27%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066672_100237524	3300005167	Soil	FSAPFFWGTQKRGLLLPKQVAALWEGTQWCKGGTGKAEATKLQDAGISLKQCPEK*
Ga0066683_108475951	3300005172	Soil	WGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGISLKQCPGK*
Ga0066682_103764363	3300005450	Soil	VGHENVSFFCPIFWGTQKRGLLLPKRAAALSEGTQWCKGGTGKAEDAKLPDAGISLKQ*
Ga0070706_1007003261	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	WGTQKRGLLLPKRAAAFWEGTQWCKGGTGKAEAAKLPDAGISLKRCPEK*
Ga0070698_1000660194	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFSAPFFWGTQKRGLLLPKRVAALWEGTQWCKGGTGKAEAAKLQDAGISLTQCPEE*
Ga0070730_1000298618	3300005537	Surface Soil	MSPFSAPFFWGTQKRGLLLPKRAAALREGTQCGKGGTGKAEAGKLLDAGISLKQCPEK*
Ga0070730_101554871	3300005537	Surface Soil	SPFSAPFFLGHLKRGLLLPKRVAALWEGTQWCKGGTGKAEAATLQDAGISLKQCPEKMSGRKRLAY*
Ga0070732_110298031	3300005542	Surface Soil	GTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLQDAGTSLKQCPEK*
Ga0066695_104432712	3300005553	Soil	MKNVSFFCPIFWSTQKRGLLLPKRVAALWEGTQWCKGGTGKAEDAKLPDAGISLKQ*
Ga0070762_105346992	3300005602	Soil	MSPFSAPFFWGTQKRRLLLPTRAAALWREPDGSSHMVVAVRDGTGKAEAAKLSDAEIDLKQCPEK*
Ga0070766_100286963	3300005921	Soil	MSPFSAPFFWGTQKRGLLLPRRAAALWEGTQWGKGGTGKAEAAKLPDAGISLKQCPGK*
Ga0070766_108805931	3300005921	Soil	MFEFPFSAPFSWGTPKRGLLLPKRAAAFREGTPWGKGGTGKAEAAKLPDAGI
Ga0075015_1008705742	3300006102	Watersheds	MKMSPFSAPFFWGTQKRGLLLPKRVAALSEGTQWCKGGTGKAEAAKLQDAGISLKQCPEK
Ga0070765_1015352601	3300006176	Soil	PFSAPFSWGTPKRGLLLPKRAAAFREGTPWGKGGTGKAQAAKLQDAGTSLKQCPGK*
Ga0079221_100945162	3300006804	Agricultural Soil	MKMSPFSAPFFWGTEKRGLLLPRRAAALWEGTQWRKGGTEKAEAAKLPDAATNLKQCPEK
Ga0073928_102882661	3300006893	Iron-Sulfur Acid Spring	MSPFSAPFFWGTQKRGLLLPRRAAALWEGTRWCKGGTGKAEDAKLQDAGISLKQCPEK
Ga0099793_100102632	3300007258	Vadose Zone Soil	MSPFSAPFFCGTQKRGLLLPRQAAALWEGTRWCKGGTGKAEDAKLQDAGISLKQCPGNER
Ga0099830_112193261	3300009088	Vadose Zone Soil	MEMSPFSAPFFWSTQERGLLLPKRAAALCEGTQWCKGGTGKAEAAKLQDAGISLKQCP
Ga0099830_118392811	3300009088	Vadose Zone Soil	KISPFSAPFFWGTQKRRLLLPKREAALWEGTQWGKGGTEKAEAAKLPDAGISLKQCPEK*
Ga0099828_113885612	3300009089	Vadose Zone Soil	MSPFSCPIFWGTQKRGLLLPKRVAALWEGTQWCKGGTGKAEAAKLQDAGI
Ga0099792_100607433	3300009143	Vadose Zone Soil	MKMSPFSAPFFWGTQKRRLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGISLKQCPEK
Ga0137392_101826363	3300011269	Vadose Zone Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGISLKQCPGK*
Ga0137392_103652381	3300011269	Vadose Zone Soil	MSPFSAPFFWGTQKRGLLLPKRVAALWEGTQWCKGGTGKAEDAKLPDAGISPKQCAEK*
Ga0137392_111340881	3300011269	Vadose Zone Soil	MKMSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEDAKLPDAGISPKQCPGK
Ga0137389_100956261	3300012096	Vadose Zone Soil	FFWGTQKRGLLLSKRAAALWEGTQWCKGGTGKAEAAKLQDAGISLKQCPGK*
Ga0137389_109707161	3300012096	Vadose Zone Soil	MKMSSFSAPFFWGTQKRGLLLPKRVAALWEGTQWCKGGTGKAEDAKLPDAGISPKQC
Ga0137383_101198704	3300012199	Vadose Zone Soil	ENVSFFCPIFWGTQKRGLLLPKRVAALWEGTQWWCKGGTGKAEAAKMPGAGISLKQCPGKDAAEKGHLSDEV*
Ga0137363_100406273	3300012202	Vadose Zone Soil	MKMSPFSAPFFWGIQKRGLLLPRRVAALWEGTQWRKGGTGKAEAAKVQDAGISLKQCPEK
Ga0137363_103767691	3300012202	Vadose Zone Soil	TQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLQDAGISLKQFPEK*
Ga0137399_100216913	3300012203	Vadose Zone Soil	MSPFSAPFFWGTQKRGLLLPERAAALWEGTQWWCKGGTGKAEAAKLPDAGISPKQWPRKCAAEKG*
Ga0137362_100379305	3300012205	Vadose Zone Soil	MSPFSAQFLWGTQKRRLLLPKRVAALWEGTQWSNGGTGKAEAAKLPDAGISLKQCPEK*
Ga0137362_101401953	3300012205	Vadose Zone Soil	MSPFSASFFWSTQKRGLLLPKRVAALWEGTQWCKGGTGKAEDAKLQDAGIA*
Ga0137362_107033682	3300012205	Vadose Zone Soil	MSPFSAPFFWGTQKRGLLLPKQAAALWEGTQWGKGGTGKAEAAKLPDAGISLKQCPEK*
Ga0137386_100436172	3300012351	Vadose Zone Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCKGGAGKAEAAKLPDAGISLKQCPGK*
Ga0137384_106513411	3300012357	Vadose Zone Soil	MKMSPFSAPFFWSTQKRGLLLPKRAAALWEGTQWLVCKGGTGKAEAAKLQDAGISLKQCPEK
Ga0137384_110933721	3300012357	Vadose Zone Soil	MKMSPFSAPFFWGTQKRGLLLPKRVAALWEGTQWCKGGTGKAEAAKLQDAGISLKQCPEK
Ga0137360_100124315	3300012361	Vadose Zone Soil	MSPFSAPFFWGTQKRGLLLPRQAAALWEGTRWCKGGTGKAEDAKLQDAGISPKQCPGK*
Ga0137360_104204672	3300012361	Vadose Zone Soil	WGTQKRGLLLPRRPAALWEGTRWCKGGTGKAEDAKLQDAGISLKQCPGK*
Ga0137358_100387553	3300012582	Vadose Zone Soil	MSPFSAPFFWGTRKRGLLLPRRAAALSEGTQRCKGGIGKAEAEKLPDAGISLKQCPGK*
Ga0137398_101673762	3300012683	Vadose Zone Soil	MFPFSAQFLWGTQKRRLLLPKRVAALWEGTQWSNGGTGKAEAAKLPDAGISLKQCPEK*
Ga0137395_112251702	3300012917	Vadose Zone Soil	MKNISFFCPIFLGHQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLQDAGISLKQFPEK
Ga0137396_100862614	3300012918	Vadose Zone Soil	MSPFSTPFFWGTRKRRLLLPKRAAALWEGTQWGKGGTGKAEDAKLQDAGISLKQCPGK*
Ga0137359_100257605	3300012923	Vadose Zone Soil	MSPFSAPFSWGTRKRRLLLPKRAAALSEGTQWGKGGTGKAEAAKLSDAGISLKQCPGK*
Ga0137359_100405254	3300012923	Vadose Zone Soil	MNFSPFSCPIFWGTQKRGLLLPKRAAALWEGTQWWCKGGTGKAEAAKLPDAGISPKQWPRKCAAEKG*
Ga0137419_102181812	3300012925	Vadose Zone Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLQDAGISLKQCPET*
Ga0137416_100041051	3300012927	Vadose Zone Soil	MSPFSAPFSWGTQKRGLLLPRRAAALSEGTQWCKGGTGKAEDAKLQDAGISLKQCP*
Ga0137416_102658922	3300012927	Vadose Zone Soil	CPIFWGTQKRGLLLPKRAAALWEGTQWRKGGTGKAEAAKLPDAGISLKQCPEK*
Ga0137404_122653861	3300012929	Vadose Zone Soil	FCPIFWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGISPKQCPENEQQKKAGY*
Ga0182040_100871501	3300016387	Soil	MSPFPAPFFWGTQKRGLLLPKRAAALWEGTQWGKGGAGKAEAAKLPDAGISLKQCPEK
Ga0134074_12430282	3300017657	Grasslands Soil	MKMSPFSAPFFRGTQKRGLLLPKRVAALWEGTQWCKGGTGKAEAAKLPDAGISLKQCPEK
Ga0187778_100026854	3300017961	Tropical Peatland	MSPFSAPFFWGTQKRGLLLPKQVAALREGTQWSKGGTGKAEAAKLPDAGISLKPCPEK
Ga0187778_100146276	3300017961	Tropical Peatland	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTRWCKGGAGKAEAVKLPDAGISLKQCPEKMSGRKRLAY
Ga0187767_103709851	3300017999	Tropical Peatland	MKMSPFSAPFFWGTQKRGLLLPKRVAALREGTQWSKGGTGKAEAVKLPDAGISLKQCPEKMSGRKRLAY
Ga0187810_100663163	3300018012	Freshwater Sediment	MSPFSAPFFWGTQKRGLLLPKRVAALWEGTQWYKGGTGKAEAAKLPDAGISQK
Ga0066669_100324051	3300018482	Grasslands Soil	ENVSFFCPIFWGTQKRGLLLPKRAAALSEGTQWCKGGTGKAEDAKLPDAGISLKQ
Ga0066669_120411342	3300018482	Grasslands Soil	FWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLQDAGIGLKQCPEK
Ga0210407_102311861	3300020579	Soil	MSPFSAPFFWGTQKRGLLLPKRAAAFWEGTQWGKGGTGKAEAAKLPDAGISLKQRPGKMSGRKRLAY
Ga0210407_105876541	3300020579	Soil	MSPFSAPFFWGTQKRGLLLPRRAAALWEGTRWCKGGTGKAEDAKLQDAGI
Ga0210403_106140872	3300020580	Soil	MTEFSTPFSWGTQKRGLLLPKRAAALWEGTRWCKGGTGKAEAAKLQDAGISL
Ga0210389_100378232	3300021404	Soil	MSPFSAPFFWGTQKRGLLLPRRAAALWEGTRWCKGGTGKAEDAEPQDAGISLKQCPEK
Ga0210387_100285365	3300021405	Soil	MSPFSAPFSWGTRKRRLLLPKRAAALCEGTQWCKGGTQKAEAARLQDAGISLKQCPRKRVAY
Ga0210394_10000080188	3300021420	Soil	MSPFCPIFLGHPKRGLLLPKRAAALLEGAQWCKGGTGEAEAAKLQDAGISVKQCPEK
Ga0210384_100069646	3300021432	Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLQDAGISLKQCPEK
Ga0210398_101737333	3300021477	Soil	MSPFCPIFLGHPKRGLLLPKRAAALLEGAQWCKGGTGEAEAAKLQDAGISLKQCPEK
Ga0210410_100035783	3300021479	Soil	MSPFSAPFFWGTQKRGLLLPRRAAALWEGTQWGKGGTGKAEAAKLPDAGISLKQCPGK
Ga0137417_14125851	3300024330	Vadose Zone Soil	MKNISFFCPIFWGTQKQGLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGISLKQCPEK
Ga0179591_12114092	3300024347	Vadose Zone Soil	MSPFSAQFFWGTQKRRLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDARISLKQCPEK
Ga0207699_103871341	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MEMSPFSAPFFRAPKSGGLLLPKRASALQEGTRWSKGGTGKAEDAKLPDAGISLKQCPEK
Ga0207693_102029722	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	HENASFFCPIFWGSQKRGLRLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGESLKQCPEK
Ga0209438_10823291	3300026285	Grasslands Soil	SFSWGTQKRGLLLPKRAAALSEETQWCKGGTGKAEDAKLPDAGISPKQCPRK
Ga0209375_12808451	3300026329	Soil	PIFWGTQERGLLLPKRAAALSEGTQWGKGGTGKAEDAELPDAGISLKQ
Ga0209378_10060221	3300026528	Soil	NVSFFCPIFWGTQKRGLLLPKRAAALSEGTQWCKGGTGKAEDAKLPDAGISLKQ
Ga0209161_100193032	3300026548	Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGISLKQCPGK
Ga0209648_101792582	3300026551	Grasslands Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCMGGTGKAEAAKLQDAGISLKQCPEK
Ga0209577_106426581	3300026552	Soil	FCPIFWGTQKRGLLLPKRAAALSEGTQWGKGGTGKAEDAELPDAGISLKQ
Ga0179587_102066761	3300026557	Vadose Zone Soil	MKMSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCMGGTGKAEAAKLQDAGISLKQCPEK
Ga0209179_10043312	3300027512	Vadose Zone Soil	MSPFSAQFFWGTQKRRLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGISLKQCPEK
Ga0209735_10427352	3300027562	Forest Soil	MSPFSAPFFWGTQKRGLLLPKRAAALSEGTQWRKGGTGKAEVAKLPDAGISM
Ga0209331_11677922	3300027603	Forest Soil	MEMSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWWCKGGTGKAEAAKLKDAGISLKQCPE
Ga0209038_102513871	3300027737	Bog Forest Soil	HENVSFFCPIFWGTQKRGLLLAKRAAALWEGTQWCKGGTGKAEAAKLPDARISLKQCPEK
Ga0209180_100015891	3300027846	Vadose Zone Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTRWGKGGTRKAEAAKMPDAGISLKRAQKMSGRKRLAY
Ga0209693_100666791	3300027855	Soil	MSPFSAPFFWGTQKRGLLLPKRVAALWVGTQWGKGGNGKAEAAKLPDAGISPKQWPK
Ga0209166_1000040127	3300027857	Surface Soil	MSPFSAPFFLGHLKRGLLLPKRVAALWEGTQWCKGGTGKAEAATLQDAGISLKQCPEKMSGRKRLAY
Ga0209166_100004984	3300027857	Surface Soil	MSPFSAPFFWGTQKRGLLLPKRAAALREGTQCGKGGTGKAEAGKLLDAGISLKQCPEK
Ga0209166_100013415	3300027857	Surface Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCRGGTGKAEAAKLPDAGIGLKQCPEK
Ga0209283_103062022	3300027875	Vadose Zone Soil	MSPFSCPIFWGTQKRGLLLPKRVAALWEGTQWCKGGTGKAEAAKLQDA
Ga0209275_100032702	3300027884	Soil	MSPFSAPFFWGTQKRGFLLPRRAAALWEGTRWCKGGTGKAEDAKLQDAGISLKQCPEK
Ga0209488_100915063	3300027903	Vadose Zone Soil	MSPFSAPFFWGTQKRRLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGISLKQCPEK
Ga0209488_105201582	3300027903	Vadose Zone Soil	MKMSPFSAPFFWGTQKRGLLLPKQAAALWEGTQWGKGGTGKAEAAKLPDAGISLKQCPEK
Ga0137415_113462671	3300028536	Vadose Zone Soil	MSPFSAPFFWGTQKRGLLLPKRVAALWEGTQWCKGGTGKAAKLQDAGISLKQCPEK
Ga0170834_1113801612	3300031057	Forest Soil	MSPFSAAFFWGTQKRGLLLPRRAAALWEGTRGCKGGTGKAEDTKLQDAGISLKQCPEKMSGRK
Ga0170823_172488941	3300031128	Forest Soil	MSPFSAAFFWGTQKRGLLLPRRAAALWEGTRGCKGGTGKAEDTKLQDAGISLKQCPEK
Ga0307476_100006485	3300031715	Hardwood Forest Soil	MSPFSAPFFWGTQERGLLLPRRAAALWEGTRWCKGGTGKAEDAKLPDAGISLKQ
Ga0307474_100331031	3300031718	Hardwood Forest Soil	MSRFSAPFFWGTKKRGLLLPKRVAALWEGTQWCKGGTGKAEAAKLQDAGI
Ga0307474_105441781	3300031718	Hardwood Forest Soil	MSPFSAPFFWGTQKRGLLLPRQAAALWEGTRWCKGGTGKAEDAKLQDAGISLKQCPGKRVAE
Ga0307474_107395462	3300031718	Hardwood Forest Soil	MSPFSAPFFCGTQKRGLLLPKRVAALWVGTQWGKGGTGKAEDAKLQDAEISLKQCPEK
Ga0306917_100235863	3300031719	Soil	MSPFSAPFFWGTQKRRLLLPKRAAALWEGTQWCKGGTGKAEAAKLPDAGIGLKECPEK
Ga0307469_106090682	3300031720	Hardwood Forest Soil	HENVSFFCPIFWGSQKRGLRLPKRAAALWEGTQWRKGGTGKAEAAKLPDAGESLKQCPEK
Ga0318501_102916052	3300031736	Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWGKGGTGKAEDTKLPDAGISPKQCPENERQKKY
Ga0307475_102604172	3300031754	Hardwood Forest Soil	MSRFSAPFFWGTKKRGLLLPKRVAALWEGTQWCKGGTGKAEAAKLQDAGISLKQCPEK
Ga0318576_102413501	3300031796	Soil	MKMSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWGKGGTGKAEDTKLPDAGISPAIG
Ga0311301_103903883	3300032160	Peatlands Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLQDAGISTKQCSEK
Ga0306920_1001018803	3300032261	Soil	MSPFSAPFFWSTQKRGLLLPKRAAALWEGTQWGKGGTGKAEAVKLPDAGISLKQCPEK
Ga0335085_100718165	3300032770	Soil	MSPFSAPFFWGTQKRQLLLPKRAAALWEGTQWSKDGTEKAEDAKPPDAGISPKQCPGK
Ga0335085_105650652	3300032770	Soil	MSPFSAPFSWGTQKRGLLLPKRVAALWEGTQWREGGTGKAEAAKLPDAGISLKQCPENGAAENAY
Ga0335079_100719355	3300032783	Soil	MKMSPFSAPFFWGTQKRGLLLPKRAAALSEGTQWREGGTGKAEAAKLPDAGISLKQCPENGAAENAY
Ga0335080_105852893	3300032828	Soil	MSPFSAPFFWGTQRRGLLLPKRATALWEGTQWCKGGTGKAEVAKLPDAGISLKQCP
Ga0335081_100624603	3300032892	Soil	MSPFSAPFFWGTQKRGLLLPKRAAALSEGTQWREGGTGKAEAAKLPDAGISLKQCPENGAAENAY
Ga0335084_100980922	3300033004	Soil	MSPFSAPFFWGTQKRGLLLPKRAAALSEGTQWREGGTGKAEAAKLPDAGISLKQ
Ga0326727_102580992	3300033405	Peat Soil	MSPFSAPFFWGTQKRGLLLPKRAAALWEGTQWCKGGTGKAEAAKLQDAGISLKHCPVK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087482

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences